Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011019A_C01 KMC011019A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO03579.1| cellulose synthase-like protein D4 [Populus tremu... 202 2e-51
ref|NP_197193.1| cellulose synthase catalytic subunit -like prot... 197 8e-50
ref|NP_186955.1| putative cellulose synthase catalytic subunit; ... 197 8e-50
dbj|BAA93027.1| Similar to Arabidopsis thaliana DNA chromosome 4... 196 1e-49
gb|AAL58185.1|AC027037_7 putative cellulose synthase [Oryza sativa] 187 8e-47
>gb|AAO03579.1| cellulose synthase-like protein D4 [Populus tremuloides]
Length = 1104
Score = 202 bits (515), Expect = 2e-51
Identities = 95/116 (81%), Positives = 105/116 (89%)
Frame = -2
Query: 576 DENDEFADIYVIKWSSLMIPPVTIIMVNLIAIAVSVVRTIYSDDRHWSRMIGGVFFSFWV 397
D +DEFAD+YV+KW+SLMIPP+TI+MVNLIAIAV RTIYS WSR++GGVFFSFWV
Sbjct: 989 DVDDEFADLYVVKWTSLMIPPITIMMVNLIAIAVGFSRTIYSVIPQWSRLLGGVFFSFWV 1048
Query: 396 LVHLYPFAKGLMGRRGKTPTIVFVWSGLISITISLLWVAINPPSGNNQIGGSFQFP 229
L HLYPFAKGLMGRRG+TPTIVFVWSGLI+ITISLLWVAINPPSG QIGGSFQFP
Sbjct: 1049 LAHLYPFAKGLMGRRGRTPTIVFVWSGLIAITISLLWVAINPPSGTTQIGGSFQFP 1104
>ref|NP_197193.1| cellulose synthase catalytic subunit -like protein; protein id:
At5g16910.1 [Arabidopsis thaliana]
gi|11357224|pir||T51546 cellulose synthase catalytic
subunit-like protein - Arabidopsis thaliana
gi|9755692|emb|CAC01704.1| cellulose synthase catalytic
subunit-like protein [Arabidopsis thaliana]
Length = 1145
Score = 197 bits (501), Expect = 8e-50
Identities = 90/116 (77%), Positives = 105/116 (89%)
Frame = -2
Query: 576 DENDEFADIYVIKWSSLMIPPVTIIMVNLIAIAVSVVRTIYSDDRHWSRMIGGVFFSFWV 397
D +DEFAD+Y++KW+SLMIPP+TIIMVNLIAIAV RTIYS WS++IGGVFFSFWV
Sbjct: 1030 DIDDEFADLYMVKWTSLMIPPITIIMVNLIAIAVGFSRTIYSVVPQWSKLIGGVFFSFWV 1089
Query: 396 LVHLYPFAKGLMGRRGKTPTIVFVWSGLISITISLLWVAINPPSGNNQIGGSFQFP 229
L HLYPFAKGLMGRRG+TPTIV+VWSGL++ITISLLWVAINPP+GN +IGG+F FP
Sbjct: 1090 LAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINPPAGNTEIGGNFSFP 1145
>ref|NP_186955.1| putative cellulose synthase catalytic subunit; protein id:
At3g03050.1, supported by cDNA: gi_12619787, supported by
cDNA: gi_13430535 [Arabidopsis thaliana]
gi|6714431|gb|AAF26119.1|AC012328_22 putative cellulose
synthase catalytic subunit [Arabidopsis thaliana]
gi|12619788|gb|AAG60543.1|AF232907_1 cellulose
synthase-like CSLD3 [Arabidopsis thaliana]
gi|13430536|gb|AAK25890.1|AF360180_1 putative cellulose
synthase catalytic subunit [Arabidopsis thaliana]
gi|14532744|gb|AAK64073.1| putative cellulose synthase
catalytic subunit [Arabidopsis thaliana]
gi|25136916|emb|CAC82909.1| cellulose synthase-like
protein [Arabidopsis thaliana]
Length = 1145
Score = 197 bits (501), Expect = 8e-50
Identities = 90/116 (77%), Positives = 105/116 (89%)
Frame = -2
Query: 576 DENDEFADIYVIKWSSLMIPPVTIIMVNLIAIAVSVVRTIYSDDRHWSRMIGGVFFSFWV 397
D +DEFAD+Y++KW+SLMIPP+TI+MVNLIAIAV RTIYS WS++IGGVFFSFWV
Sbjct: 1030 DVDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGFSRTIYSVIPQWSKLIGGVFFSFWV 1089
Query: 396 LVHLYPFAKGLMGRRGKTPTIVFVWSGLISITISLLWVAINPPSGNNQIGGSFQFP 229
L HLYPFAKGLMGRRG+TPTIV+VWSGL++ITISLLWVAINPP+G+ QIGGSF FP
Sbjct: 1090 LAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWVAINPPAGSTQIGGSFTFP 1145
>dbj|BAA93027.1| Similar to Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10;
putative protein. (AL035538) [Oryza sativa (japonica
cultivar-group)]
Length = 1170
Score = 196 bits (499), Expect = 1e-49
Identities = 89/116 (76%), Positives = 105/116 (89%)
Frame = -2
Query: 576 DENDEFADIYVIKWSSLMIPPVTIIMVNLIAIAVSVVRTIYSDDRHWSRMIGGVFFSFWV 397
+ +DEFAD+Y++KW+SLMIPP+ I+MVNLIAIAV RTIYS+ WS+++GGVFFSFWV
Sbjct: 1055 EADDEFADLYIVKWTSLMIPPIVIMMVNLIAIAVGFSRTIYSEIPQWSKLLGGVFFSFWV 1114
Query: 396 LVHLYPFAKGLMGRRGKTPTIVFVWSGLISITISLLWVAINPPSGNNQIGGSFQFP 229
L HLYPFAKGLMGRRG+TPTIVFVWSGL++ITISLLWVAINPPS N+QIGGSF FP
Sbjct: 1115 LAHLYPFAKGLMGRRGRTPTIVFVWSGLLAITISLLWVAINPPSQNSQIGGSFTFP 1170
>gb|AAL58185.1|AC027037_7 putative cellulose synthase [Oryza sativa]
Length = 1127
Score = 187 bits (475), Expect = 8e-47
Identities = 85/118 (72%), Positives = 103/118 (87%), Gaps = 2/118 (1%)
Frame = -2
Query: 576 DENDEFADIYVIKWSSLMIPPVTIIMVNLIAIAVSVVRTIYSDDRHWSRMIGGVFFSFWV 397
D +DEFA++Y +KW+SLMIPP+TIIM+NL+AIAV RTIYS WS+++GGVFFSFWV
Sbjct: 1010 DVDDEFAELYAVKWTSLMIPPLTIIMINLVAIAVGFSRTIYSTIPQWSKLLGGVFFSFWV 1069
Query: 396 LVHLYPFAKGLMGRRGKTPTIVFVWSGLISITISLLWVAINPPS--GNNQIGGSFQFP 229
L HLYPFAKGLMGRRG+TPTIV+VWSGL++ITISLLW+AI PPS N+Q+GGSF FP
Sbjct: 1070 LAHLYPFAKGLMGRRGRTPTIVYVWSGLVAITISLLWIAIKPPSAQANSQLGGSFSFP 1127
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,777,505
Number of Sequences: 1393205
Number of extensions: 11133801
Number of successful extensions: 29472
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 28503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29389
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
