Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC011007A_C01 KMC011007A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_612779.1| glycoprotein US6 [Chimpanzee cytomegalovirus] g... 33 2.2
gb|EAA08166.1| agCP1858 [Anopheles gambiae str. PEST] 33 2.9
gb|AAM61265.1| capsid protein [porcine circovirus] 33 3.8
gb|AAD03062.1| ORF-2 [porcine circovirus type 2-C] 33 3.8
gb|AAD03085.1| ORF-2 [porcine circovirus type 2-B] 33 3.8
>ref|NP_612779.1| glycoprotein US6 [Chimpanzee cytomegalovirus]
gi|19881165|gb|AAM00785.1|AF480884_137 glycoprotein US6
[chimpanzee cytomegalovirus]
Length = 192
Score = 33.5 bits (75), Expect = 2.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -1
Query: 470 VLGVSIFDAGEGHNIPHDTDPPEQQRSNMYTRRKDQPRKRVGSLVCR 330
+LG+++F G P D PPE S + R+ P+KR+G CR
Sbjct: 9 LLGLALFSVSAGRADPRDA-PPEDLLSLFHRRQTCVPKKRIGVSECR 54
>gb|EAA08166.1| agCP1858 [Anopheles gambiae str. PEST]
Length = 429
Score = 33.1 bits (74), Expect = 2.9
Identities = 23/69 (33%), Positives = 34/69 (48%), Gaps = 5/69 (7%)
Frame = +3
Query: 297 LLFPWICCPRSPADQAAHTFPRLVFPPCVHI*SLLLRWIGIMGYI--MTFTCIKYGNAKH 470
+L+ ++ R+P D +AH FPRLV P V + G + ++FT K+G H
Sbjct: 340 ILYSYLVYRRNPPD-SAHGFPRLVRPTAVRSKHCVCHVCAADGQLRDVSFTTSKHGQIVH 398
Query: 471 RW---DRWG 488
R RWG
Sbjct: 399 RCAKASRWG 407
>gb|AAM61265.1| capsid protein [porcine circovirus]
Length = 231
Score = 32.7 bits (73), Expect = 3.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 383 YTRRKDQPRKRVGSLVCRTPWTTYPRKK 300
Y RR+ +PR +G ++ R PW +PR +
Sbjct: 8 YRRRRHRPRSHLGQILRRRPWLVHPRHR 35
>gb|AAD03062.1| ORF-2 [porcine circovirus type 2-C]
Length = 159
Score = 32.7 bits (73), Expect = 3.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 383 YTRRKDQPRKRVGSLVCRTPWTTYPRKK 300
Y RR+ +PR +G ++ R PW +PR +
Sbjct: 8 YRRRRTRPRSHLGQILRRRPWLVHPRHR 35
>gb|AAD03085.1| ORF-2 [porcine circovirus type 2-B]
Length = 159
Score = 32.7 bits (73), Expect = 3.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 383 YTRRKDQPRKRVGSLVCRTPWTTYPRKK 300
Y RR+ +PR +G ++ R PW +PR +
Sbjct: 8 YRRRRHRPRSHLGQILRRRPWLVHPRHR 35
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 569,532,146
Number of Sequences: 1393205
Number of extensions: 13319255
Number of successful extensions: 33010
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 31784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33008
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
