Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010994A_C01 KMC010994A_c01
(641 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_782672.1| hypothetical protein [Clostridium tetani E88] g... 32 9.4
gb|EAA00402.1| agCP9499 [Anopheles gambiae str. PEST] 32 9.4
>ref|NP_782672.1| hypothetical protein [Clostridium tetani E88]
gi|28204170|gb|AAO36609.1| hypothetical protein
[Clostridium tetani E88]
Length = 352
Score = 31.6 bits (70), Expect = 9.4
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -1
Query: 434 GNGPSTGYCDEEYSFQQIHFLP-LCNVHYNGWLVKEAHALTPLVIVRVQVLFY 279
GN GY + + F Q+H P L NV NG + +H T L + R ++FY
Sbjct: 39 GNISRYGYINNNFIFTQVHAYPSLYNVDENGKITSISHNATDLNL-RANMIFY 90
>gb|EAA00402.1| agCP9499 [Anopheles gambiae str. PEST]
Length = 1679
Score = 31.6 bits (70), Expect = 9.4
Identities = 17/38 (44%), Positives = 21/38 (54%)
Frame = -3
Query: 324 CFDSSGNCSSSSLILCVWEKNLLEELAPTGYECSQPTG 211
C ++GNCS LC LL +AP GY C+ PTG
Sbjct: 332 CRRNNGNCSH----LC-----LLSTIAPAGYSCACPTG 360
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 572,743,258
Number of Sequences: 1393205
Number of extensions: 12739892
Number of successful extensions: 24355
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24355
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
