Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010992A_C01 KMC010992A_c01
(474 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00120331.1| hypothetical protein [Bifidobacterium longum ... 31 7.6
>ref|ZP_00120331.1| hypothetical protein [Bifidobacterium longum DJO10A]
Length = 576
Score = 30.8 bits (68), Expect = 7.6
Identities = 14/36 (38%), Positives = 21/36 (57%)
Frame = +3
Query: 270 NDLQFTSSSLLIILSVYPLPYQQCMKHQAEGLQPAR 377
+D+QF S LL+ S++ LP +H+A QP R
Sbjct: 63 SDIQFHHSKLLVFHSLFVLPLSYGRRHRAPPAQPTR 98
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,321,551
Number of Sequences: 1393205
Number of extensions: 8144535
Number of successful extensions: 15013
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15009
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
