Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010976A_C01 KMC010976A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87320.1| unknown protein [Arabidopsis thaliana] 107 1e-22
ref|NP_190763.1| putative protein; protein id: At3g51950.1, supp... 107 1e-22
gb|AAM66020.1| unknown [Arabidopsis thaliana] 107 1e-22
ref|NP_191904.1| putative protein; protein id: At3g63450.1 [Arab... 96 4e-19
ref|NP_188747.2| RRM-containing protein; protein id: At3g21100.1... 68 9e-11
>gb|AAL87320.1| unknown protein [Arabidopsis thaliana]
Length = 540
Score = 107 bits (267), Expect = 1e-22
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +1
Query: 358 MDGYEATRIVFSRIQNLDPENASKIMGSLLLQDHGEKEMIRLALGPESLVHSVILTARKE 537
MDGYEATRIV SRIQ+LDPENASKIMG LLLQDHGEKEMIRLA GPE+LVHSVI+ A+KE
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 538 FG 543
G
Sbjct: 61 LG 62
>ref|NP_190763.1| putative protein; protein id: At3g51950.1, supported by cDNA:
7104., supported by cDNA: gi_19423978 [Arabidopsis
thaliana] gi|11357779|pir||T49074 hypothetical protein
F4F15.60 - Arabidopsis thaliana
gi|4678924|emb|CAB41315.1| putative protein [Arabidopsis
thaliana] gi|23297746|gb|AAN13016.1| unknown protein
[Arabidopsis thaliana]
Length = 540
Score = 107 bits (267), Expect = 1e-22
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +1
Query: 358 MDGYEATRIVFSRIQNLDPENASKIMGSLLLQDHGEKEMIRLALGPESLVHSVILTARKE 537
MDGYEATRIV SRIQ+LDPENASKIMG LLLQDHGEKEMIRLA GPE+LVHSVI+ A+KE
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 538 FG 543
G
Sbjct: 61 LG 62
>gb|AAM66020.1| unknown [Arabidopsis thaliana]
Length = 540
Score = 107 bits (267), Expect = 1e-22
Identities = 53/62 (85%), Positives = 57/62 (91%)
Frame = +1
Query: 358 MDGYEATRIVFSRIQNLDPENASKIMGSLLLQDHGEKEMIRLALGPESLVHSVILTARKE 537
MDGYEATRIV SRIQ+LDPENASKIMG LLLQDHGEKEMIRLA GPE+LVHSVI+ A+KE
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 538 FG 543
G
Sbjct: 61 LG 62
>ref|NP_191904.1| putative protein; protein id: At3g63450.1 [Arabidopsis thaliana]
gi|11357942|pir||T49186 hypothetical protein MAA21.80 -
Arabidopsis thaliana gi|7573328|emb|CAB87798.1| putative
protein [Arabidopsis thaliana]
Length = 399
Score = 95.5 bits (236), Expect = 4e-19
Identities = 47/60 (78%), Positives = 53/60 (88%)
Frame = +1
Query: 358 MDGYEATRIVFSRIQNLDPENASKIMGSLLLQDHGEKEMIRLALGPESLVHSVILTARKE 537
MD YEATRIV SRIQNLDP NASKI+G LLLQDHGEKEMIRLA GP++L+HSVI A+K+
Sbjct: 1 MDVYEATRIVLSRIQNLDPANASKIIGLLLLQDHGEKEMIRLAFGPQNLLHSVIAKAKKD 60
>ref|NP_188747.2| RRM-containing protein; protein id: At3g21100.1 [Arabidopsis
thaliana]
Length = 602
Score = 67.8 bits (164), Expect = 9e-11
Identities = 34/69 (49%), Positives = 49/69 (70%)
Frame = +1
Query: 358 MDGYEATRIVFSRIQNLDPENASKIMGSLLLQDHGEKEMIRLALGPESLVHSVILTARKE 537
MD + T I+F++I+ L+P+ ASKI+G LLLQD G+ +++RLALGPE+L+ SV L A+
Sbjct: 1 MDPGDPTSILFTKIRTLEPDFASKIIGYLLLQDLGKTDLMRLALGPETLLQSVCLKAKSA 60
Query: 538 FGXGMNSPS 564
G N S
Sbjct: 61 LGLSSNGSS 69
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,724,463
Number of Sequences: 1393205
Number of extensions: 8927532
Number of successful extensions: 34876
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 29697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33912
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
