Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010967A_C01 KMC010967A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_648534.1| CG17824-PA [Drosophila melanogaster] gi|7294639... 33 3.2
ref|NP_693340.1| hypothetical protein [Oceanobacillus iheyensis ... 31 9.4
ref|NP_491673.1| Sterol-sensing domain protein required for apic... 31 9.4
pir||T33156 hypothetical protein F56H1.1 - Caenorhabditis elegans 31 9.4
>ref|NP_648534.1| CG17824-PA [Drosophila melanogaster] gi|7294639|gb|AAF49977.1|
CG17824-PA [Drosophila melanogaster]
Length = 798
Score = 32.7 bits (73), Expect = 3.2
Identities = 16/44 (36%), Positives = 19/44 (42%), Gaps = 9/44 (20%)
Frame = -1
Query: 454 LPFERGSSHGHGNSLCSW---------S*DCAHLTLLRPYRGGC 350
LPF RG ++CSW S DC HL + GGC
Sbjct: 103 LPFPRGHEQDRNQTICSWAMSKLAGNSSDDCQHLAVRPSLAGGC 146
>ref|NP_693340.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
gi|22778105|dbj|BAC14375.1| hypothetical conserved
protein [Oceanobacillus iheyensis]
Length = 321
Score = 31.2 bits (69), Expect = 9.4
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Frame = -2
Query: 348 WCIGRHFF------SLTSILNQVAFFCDLLFRSFGIVGVSLGK 238
+ GR+FF TS++ + F L+F FGI+G+ LGK
Sbjct: 253 YLFGRYFFLDEHVQGWTSVMVSIFFIGGLIFFQFGIIGLYLGK 295
>ref|NP_491673.1| Sterol-sensing domain protein required for apical sorting in
epithelial cells, dispatched related (104.0 kD) (che-14)
[Caenorhabditis elegans] gi|7710961|emb|CAB90211.1|
CHE-14 protein [Caenorhabditis elegans]
gi|14916329|gb|AAC19198.2| Dispatched family protein 1
[Caenorhabditis elegans]
Length = 917
Score = 31.2 bits (69), Expect = 9.4
Identities = 15/28 (53%), Positives = 20/28 (70%)
Frame = -3
Query: 386 TSNPLKTLQGWVHGALDAIFLVLQVYLT 303
TS+ + TL GWV G L+A+ LVL V L+
Sbjct: 784 TSSAIVTLLGWVLGVLEAVILVLVVGLS 811
>pir||T33156 hypothetical protein F56H1.1 - Caenorhabditis elegans
Length = 969
Score = 31.2 bits (69), Expect = 9.4
Identities = 15/28 (53%), Positives = 20/28 (70%)
Frame = -3
Query: 386 TSNPLKTLQGWVHGALDAIFLVLQVYLT 303
TS+ + TL GWV G L+A+ LVL V L+
Sbjct: 836 TSSAIVTLLGWVLGVLEAVILVLVVGLS 863
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 438,760,258
Number of Sequences: 1393205
Number of extensions: 8572702
Number of successful extensions: 15852
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15849
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
