Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010957A_C01 KMC010957A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Ara... 137 6e-32
emb|CAC24690.1| topoisomerase 6 subunit B [Arabidopsis thaliana] 137 6e-32
gb|EAA22783.1| hypothetical protein [Plasmodium yoelii yoelii] 35 0.68
gb|AAC95129.1| s-nexilin [Rattus norvegicus] 33 2.0
ref|NP_703458.1| hypothetical protein [Plasmodium falciparum 3D7... 33 2.6
>dbj|BAB02486.1| DNA topoisomerase VI subunit B-like protein [Arabidopsis thaliana]
Length = 694
Score = 137 bits (346), Expect = 6e-32
Identities = 70/117 (59%), Positives = 94/117 (79%), Gaps = 2/117 (1%)
Frame = -2
Query: 517 EQQERKRNLNRYIPDASSAIYNILNT-TPLHASKKLRSGGDEEELMRKVSENLITKETLI 341
EQQERKR+L+RYIPDA+ A+Y +L T H +K+ R G ++ ++ KVS+ +ITKETL
Sbjct: 577 EQQERKRSLSRYIPDATGAVYEVLKQMTEEHKTKRKRYGEEDIVMLDKVSKQIITKETLK 636
Query: 340 EKLAKYVEQVDYEMALEYATQSGVSEQPRETIYIQSLEA-ENKIVDLHAPFFVFRVV 173
EKLA++VEQVDYEMALEYATQSGVSE+PRE IY+Q L+ ++ +DLH+P FVFR++
Sbjct: 637 EKLAEHVEQVDYEMALEYATQSGVSEEPRENIYLQHLDPNKSNFIDLHSPTFVFRLM 693
>emb|CAC24690.1| topoisomerase 6 subunit B [Arabidopsis thaliana]
Length = 670
Score = 137 bits (346), Expect = 6e-32
Identities = 70/117 (59%), Positives = 94/117 (79%), Gaps = 2/117 (1%)
Frame = -2
Query: 517 EQQERKRNLNRYIPDASSAIYNILNT-TPLHASKKLRSGGDEEELMRKVSENLITKETLI 341
EQQERKR+L+RYIPDA+ A+Y +L T H +K+ R G ++ ++ KVS+ +ITKETL
Sbjct: 553 EQQERKRSLSRYIPDATGAVYEVLKQMTEEHKTKRKRYGEEDIVMLDKVSKQIITKETLK 612
Query: 340 EKLAKYVEQVDYEMALEYATQSGVSEQPRETIYIQSLEA-ENKIVDLHAPFFVFRVV 173
EKLA++VEQVDYEMALEYATQSGVSE+PRE IY+Q L+ ++ +DLH+P FVFR++
Sbjct: 613 EKLAEHVEQVDYEMALEYATQSGVSEEPRENIYLQHLDPNKSNFIDLHSPTFVFRLM 669
>gb|EAA22783.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 832
Score = 34.7 bits (78), Expect = 0.68
Identities = 22/74 (29%), Positives = 37/74 (49%), Gaps = 1/74 (1%)
Frame = -2
Query: 424 SKKLRSGGDEEELMRKVSENLITKETLIEKLAKYVEQVDYEMALEYA-TQSGVSEQPRET 248
S +L GDE+ K+ N+I K E K ++ YE + S SE+ +
Sbjct: 548 SNELSKNGDEKINCEKIKTNIINKNNNFENNIKLKNEICYEKEESNSPILSNSSEKWKIF 607
Query: 247 IYIQSLEAENKIVD 206
+Y ++++ ENKI+D
Sbjct: 608 MYNKNMKNENKIID 621
>gb|AAC95129.1| s-nexilin [Rattus norvegicus]
Length = 606
Score = 33.1 bits (74), Expect = 2.0
Identities = 17/70 (24%), Positives = 35/70 (49%)
Frame = -2
Query: 517 EQQERKRNLNRYIPDASSAIYNILNTTPLHASKKLRSGGDEEELMRKVSENLITKETLIE 338
E++E + Y+P + + + H ++ R EEE R++ ++L+ K +
Sbjct: 18 EEEEPSKVEKAYVPKLTGTVKGKFDEMEKHRQEEQRKR-TEEERKRRIEQDLLEKRKMQR 76
Query: 337 KLAKYVEQVD 308
+LAK EQ++
Sbjct: 77 ELAKRAEQIE 86
>ref|NP_703458.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504599|emb|CAD51478.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 381
Score = 32.7 bits (73), Expect = 2.6
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -2
Query: 385 MRKVSENLITKETLIEKLAKYVEQVDYEMALEYATQSGVSEQPR-ETIYIQSLEAENK 215
M+K +N+IT++ E + K + + +YEM + + +SE+ R E I+ LE + K
Sbjct: 80 MKKYKDNIITRKKTPENIYKEIYENNYEMKYDEDIPNNMSEEKRDEKEVIEHLEIDEK 137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,252,642
Number of Sequences: 1393205
Number of extensions: 8122173
Number of successful extensions: 21197
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 20609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21185
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
