Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010955A_C01 KMC010955A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB90383.1| B1065E10.34 [Oryza sativa (japonica cultivar-gro... 43 2e-07
ref|NP_201175.1| unknown protein; protein id: At5g63700.1 [Arabi... 41 0.001
ref|NP_190681.1| putative protein; protein id: At3g51120.1 [Arab... 31 0.20
ref|NP_179400.2| unknown protein; protein id: At2g18090.1, suppo... 31 0.26
pir||B84560 hypothetical protein At2g18090 [imported] - Arabidop... 31 0.26
>dbj|BAB90383.1| B1065E10.34 [Oryza sativa (japonica cultivar-group)]
Length = 822
Score = 43.1 bits (100), Expect(2) = 2e-07
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = -3
Query: 486 KNKRRKEENIAEDWCFACKDGGLMRVCDYRTRLR 385
+ ++K E++AE+ CF CKDGG +RVCD++ L+
Sbjct: 3 RRSKQKVEDMAEELCFVCKDGGDIRVCDFKNCLK 36
Score = 33.5 bits (75), Expect(2) = 2e-07
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = -1
Query: 281 RDCLKAYHPHCVGK 240
++CLK YHPHCVGK
Sbjct: 32 KNCLKGYHPHCVGK 45
>ref|NP_201175.1| unknown protein; protein id: At5g63700.1 [Arabidopsis thaliana]
gi|10177051|dbj|BAB10463.1| gene_id:MBK5.18~unknown
protein [Arabidopsis thaliana]
Length = 571
Score = 40.8 bits (94), Expect(2) = 0.001
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -3
Query: 498 MVRTKNKRRKEENIAEDWCFACKDGGLMRVCDYR 397
+V + ++E EDWCF CKDGG + +CD++
Sbjct: 7 VVEILDDEEEDEKECEDWCFICKDGGNLMLCDFK 40
Score = 23.1 bits (48), Expect(2) = 0.001
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -1
Query: 281 RDCLKAYHPHCVGK 240
+DC K YH CV K
Sbjct: 40 KDCPKVYHESCVEK 53
>ref|NP_190681.1| putative protein; protein id: At3g51120.1 [Arabidopsis thaliana]
gi|11290564|pir||T45743 hypothetical protein F24M12.160
- Arabidopsis thaliana gi|6562264|emb|CAB62634.1|
putative protein [Arabidopsis thaliana]
Length = 1247
Score = 30.8 bits (68), Expect(2) = 0.20
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 471 KEENIAEDWCFACKDGGLMRVCDYR 397
K+E+ ED CF C DGG + +CD R
Sbjct: 59 KKEDKEEDVCFICFDGGDLVLCDRR 83
Score = 25.0 bits (53), Expect(2) = 0.20
Identities = 8/12 (66%), Positives = 10/12 (82%)
Frame = -1
Query: 281 RDCLKAYHPHCV 246
R+C KAYHP C+
Sbjct: 83 RNCPKAYHPACI 94
>ref|NP_179400.2| unknown protein; protein id: At2g18090.1, supported by cDNA:
gi_13877654 [Arabidopsis thaliana]
gi|13877655|gb|AAK43905.1|AF370586_1 Unknown protein
[Arabidopsis thaliana]
Length = 824
Score = 30.8 bits (68), Expect(2) = 0.26
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 483 NKRRKEENIAEDWCFACKDGGLMRVCDYR 397
+++R+E+ ED CF C DGG + +CD R
Sbjct: 72 SRKRRED---EDVCFVCFDGGSLVLCDRR 97
Score = 24.6 bits (52), Expect(2) = 0.26
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 281 RDCLKAYHPHCV 246
R C KAYHP CV
Sbjct: 97 RGCPKAYHPACV 108
>pir||B84560 hypothetical protein At2g18090 [imported] - Arabidopsis thaliana
gi|4406809|gb|AAD20117.1| unknown protein [Arabidopsis
thaliana]
Length = 802
Score = 30.8 bits (68), Expect(2) = 0.26
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -3
Query: 483 NKRRKEENIAEDWCFACKDGGLMRVCDYR 397
+++R+E+ ED CF C DGG + +CD R
Sbjct: 72 SRKRRED---EDVCFVCFDGGSLVLCDRR 97
Score = 24.6 bits (52), Expect(2) = 0.26
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 281 RDCLKAYHPHCV 246
R C KAYHP CV
Sbjct: 97 RGCPKAYHPACV 108
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,634,405
Number of Sequences: 1393205
Number of extensions: 9694228
Number of successful extensions: 24547
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 23688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24533
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
