Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010954A_C01 KMC010954A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB31458.1| gibbon ape leukemia virus receptor [Mus musculus=... 35 0.70
dbj|BAC65810.1| mKIAA1577 protein [Mus musculus] 34 0.91
dbj|BAB13403.1| KIAA1577 protein [Homo sapiens] 34 0.91
dbj|BAC29905.1| unnamed protein product [Mus musculus] 34 0.91
dbj|BAB33020.1| OJ1174_D05.12 [Oryza sativa (japonica cultivar-g... 34 1.2
>gb|AAB31458.1| gibbon ape leukemia virus receptor [Mus musculus=Japanese feral
mice, spp. molossinus, susceptible cells, Peptide, 680
aa]
Length = 680
Score = 34.7 bits (78), Expect = 0.70
Identities = 13/54 (24%), Positives = 31/54 (57%)
Frame = -1
Query: 398 IITCFIIYLIGDLVQVMKLLQRLKMWIMLFTSCNLCGLCCGMWMIARQILQCAG 237
++ +++Y+ GD+ M + +W++L+ G+C G+W+ R+++Q G
Sbjct: 543 LVALYLVYITGDVSSKMAI----PIWLLLYGGI---GICIGLWVWGRRVIQTMG 589
>dbj|BAC65810.1| mKIAA1577 protein [Mus musculus]
Length = 827
Score = 34.3 bits (77), Expect = 0.91
Identities = 21/59 (35%), Positives = 28/59 (46%), Gaps = 1/59 (1%)
Frame = +3
Query: 261 SNHPHSTAQTT*VAACK*HYPHLQPLQQFHNLDKVSNKVNNKACYYLDT-NSPFKNRSW 434
SN PH T T + AC H+ Q H +S+ + CY+ DT NS F +R W
Sbjct: 309 SNRPHRTVFTRAIEACDLHW------QDSHLQHIISSDLYTNYCYHDDTENSLFDSRGW 361
>dbj|BAB13403.1| KIAA1577 protein [Homo sapiens]
Length = 743
Score = 34.3 bits (77), Expect = 0.91
Identities = 21/59 (35%), Positives = 28/59 (46%), Gaps = 1/59 (1%)
Frame = +3
Query: 261 SNHPHSTAQTT*VAACK*HYPHLQPLQQFHNLDKVSNKVNNKACYYLDT-NSPFKNRSW 434
SN PH T T + AC H+ Q H +S+ + CY+ DT NS F +R W
Sbjct: 35 SNRPHRTVFTRAIEACDLHW------QDSHLQHIISSDLYTNYCYHDDTENSLFDSRGW 87
>dbj|BAC29905.1| unnamed protein product [Mus musculus]
Length = 743
Score = 34.3 bits (77), Expect = 0.91
Identities = 21/59 (35%), Positives = 28/59 (46%), Gaps = 1/59 (1%)
Frame = +3
Query: 261 SNHPHSTAQTT*VAACK*HYPHLQPLQQFHNLDKVSNKVNNKACYYLDT-NSPFKNRSW 434
SN PH T T + AC H+ Q H +S+ + CY+ DT NS F +R W
Sbjct: 35 SNRPHRTVFTRAIEACDLHW------QDSHLQHIISSDLYTNYCYHDDTENSLFDSRGW 87
>dbj|BAB33020.1| OJ1174_D05.12 [Oryza sativa (japonica cultivar-group)]
Length = 357
Score = 33.9 bits (76), Expect = 1.2
Identities = 17/41 (41%), Positives = 26/41 (62%), Gaps = 2/41 (4%)
Frame = -2
Query: 517 CRSEXILVEEEMEKNCS--NSVESSPESSYHDLFLKGLFVS 401
CR + I +EEE E N + +S SS S + D+F+ G+FV+
Sbjct: 316 CRDQQIPIEEEAENNTTIVSSPPSSCSSLHEDIFMAGMFVA 356
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,597,746
Number of Sequences: 1393205
Number of extensions: 8845214
Number of successful extensions: 20536
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20526
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
