Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010930A_C01 KMC010930A_c01
(482 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN78331.1| TcC31.4 [Trypanosoma cruzi] 35 0.56
ref|NP_704180.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.3
gb|AAM50335.1| cytochrome b [Gymnocranius elongatus] 32 2.8
gb|AAK15143.1|AF240751_1 cytochrome b [Lethrinus ornatus] 32 4.8
dbj|BAB32431.1| cytochrome b [Pungitius pungitius pungitius] 32 4.8
>gb|AAN78331.1| TcC31.4 [Trypanosoma cruzi]
Length = 227
Score = 34.7 bits (78), Expect = 0.56
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 323 LHRQFFIDPLCQVTSFSFFLIPDP--SAFMFSFRFLFPPIFLFSE 451
++ FF+ P F FFLI P S F+F F FLFP F++ E
Sbjct: 163 IYFMFFVLPPFYFILFYFFLIDSPHLSFFIFFFSFLFPSYFVYIE 207
>ref|NP_704180.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498918|emb|CAD50996.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 3351
Score = 33.5 bits (75), Expect = 1.3
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Frame = +3
Query: 3 FKSTTKTIRNTNYTKYVFN*L--KYYKA*KMLPSKKFN----KHNITSIKLILTFDHGYN 164
FKS K I++T + K VFN +Y + K LP KF NI+S L Y
Sbjct: 974 FKSKGKVIQSTKFWKKVFNECTRRYIENYKQLPKNKFKIKSPDFNISSNDLKSEEHEQYQ 1033
Query: 165 *HS*YFSGMCPTWLK-LMLC-YHLFFSVVL----FSLSSFSVLQSQLRVSP 299
Y+ T++K +C Y L F++ L S+ +F+ L SQ ++P
Sbjct: 1034 LFEKYYVDFFKTYIKGYGICQYILTFNIHLQRKGTSMDNFNFLFSQNTINP 1084
>gb|AAM50335.1| cytochrome b [Gymnocranius elongatus]
Length = 380
Score = 32.3 bits (72), Expect = 2.8
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 22/115 (19%)
Frame = +2
Query: 122 NFN*ANPNIRP------WL*LTFLILFWYVPD-LVEVNALLSFILLSCVVFVV------- 259
NF ANP + P W L + +P+ L V ALL+ IL+ VV ++
Sbjct: 255 NFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMVVPILHTSKQRS 314
Query: 260 --------FLFCVAVAATGIPRVLKSLP*LHRQFFIDPLCQVTSFSFFLIPDPSA 400
FLF V +A I + +P H I + +T FS FL+ P A
Sbjct: 315 LTFRPLTQFLFWVLIANVAILTWIGGMPVEHPFIIIGQIASLTYFSLFLLAMPFA 369
>gb|AAK15143.1|AF240751_1 cytochrome b [Lethrinus ornatus]
Length = 380
Score = 31.6 bits (70), Expect = 4.8
Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 22/123 (17%)
Frame = +2
Query: 122 NFN*ANPNIRP------WL*LTFLILFWYVPD-LVEVNALLSFILLSCVVFVV------- 259
NF ANP + P W L + +P+ L V ALL+ IL+ VV ++
Sbjct: 255 NFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMVVPILHTSKQRS 314
Query: 260 --------FLFCVAVAATGIPRVLKSLP*LHRQFFIDPLCQVTSFSFFLIPDPSAFMFSF 415
FLF +A I + +P H I + + FS FLI P+A F
Sbjct: 315 LTFRPLTQFLFWTLIANVAILTWIGGMPVEHPFIIIGQIASLLYFSLFLIITPAAGWFEN 374
Query: 416 RFL 424
+ L
Sbjct: 375 KSL 377
>dbj|BAB32431.1| cytochrome b [Pungitius pungitius pungitius]
Length = 192
Score = 31.6 bits (70), Expect = 4.8
Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 22/123 (17%)
Frame = +2
Query: 122 NFN*ANPNIRP------WL*LTFLILFWYVPD-LVEVNALLSFILLSCVVFVV------- 259
NF ANP + P W L + +P+ L V ALL+ IL+ VV ++
Sbjct: 58 NFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMVVPILHTSKQRG 117
Query: 260 --------FLFCVAVAATGIPRVLKSLP*LHRQFFIDPLCQVTSFSFFLIPDPSAFMFSF 415
FLF +A I + +P H I + V FS FL+ P A M
Sbjct: 118 LTFRPVTQFLFWTLIADVAILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLYPGAAMVEN 177
Query: 416 RFL 424
+ L
Sbjct: 178 KML 180
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 381,788,363
Number of Sequences: 1393205
Number of extensions: 7635974
Number of successful extensions: 23133
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 22037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23092
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
