Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010926A_C01 KMC010926A_c01
(444 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB85404.1| B1064G04.26 [Oryza sativa (japonica cultivar-gro... 37 0.042
ref|NP_196735.1| arabinogalactan-protein (AGP15); protein id: At... 37 0.072
ref|NP_032884.1| protein kinase C, mu [Mus musculus] gi|12230259... 36 0.094
ref|NP_609327.2| CG31712-PA [Drosophila melanogaster] gi|2294607... 35 0.27
dbj|BAB68031.1| P0455H0310.22 [Oryza sativa (japonica cultivar-g... 35 0.27
>dbj|BAB85404.1| B1064G04.26 [Oryza sativa (japonica cultivar-group)]
Length = 61
Score = 37.4 bits (85), Expect = 0.042
Identities = 21/54 (38%), Positives = 32/54 (58%)
Frame = -1
Query: 375 AFAIVLAVALFSIAASAQDLSPSSAPAPSPDAGAAGSVAVSFGVSVVLSVLPAM 214
AFA+V A AL ++A++A APAP+P +GA +V+ V V +L A+
Sbjct: 11 AFAVVAAAALATVASAAD------APAPAPTSGAVAAVSAPLSVCCVAGLLLAL 58
>ref|NP_196735.1| arabinogalactan-protein (AGP15); protein id: At5g11740.1
[Arabidopsis thaliana] gi|11358218|pir||T48533
hypothetical protein T22P22.130 - Arabidopsis thaliana
gi|7573388|emb|CAB87692.1| putative protein [Arabidopsis
thaliana] gi|10880507|gb|AAG24283.1|AF195896_1
arabinogalactan protein [Arabidopsis thaliana]
gi|14030655|gb|AAK53002.1|AF375418_1
AT5g11740/T22P22_130 [Arabidopsis thaliana]
gi|22136564|gb|AAM91068.1| AT5g11740/T22P22_130
[Arabidopsis thaliana]
Length = 61
Score = 36.6 bits (83), Expect = 0.072
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Frame = -1
Query: 378 KAFAIVLAVALFSIAASAQDLSPSSAPAPSPDAGAAGSVA--VSFGVSVVLSVL 223
KA +VL + + S+ ASAQ S APAPSP +G++ A VS GV+ V +++
Sbjct: 5 KASIVVLMMVIISVVASAQ----SEAPAPSPTSGSSAISASFVSAGVAAVAALV 54
>ref|NP_032884.1| protein kinase C, mu [Mus musculus]
gi|12230259|sp|Q62101|KPCM_MOUSE Protein kinase C, mu
type (nPKC-mu) (Protein kinase D) gi|2137767|pir||I48719
protein kinase C (EC 2.7.1.-) mu precursor - mouse
gi|520878|emb|CAA84283.1| serine/threonine protein
kinase [Mus musculus]
Length = 918
Score = 36.2 bits (82), Expect = 0.094
Identities = 20/49 (40%), Positives = 28/49 (56%)
Frame = -1
Query: 360 LAVALFSIAASAQDLSPSSAPAPSPDAGAAGSVAVSFGVSVVLSVLPAM 214
L A ++AA+A L P S PAP P GAA + +SF + + LS P +
Sbjct: 13 LLPAAAAVAAAAAALVPGSGPAPFPAPGAAPAGGISFHLQIGLSREPVL 61
>ref|NP_609327.2| CG31712-PA [Drosophila melanogaster] gi|22946070|gb|AAF52833.2|
CG31712-PA [Drosophila melanogaster]
Length = 309
Score = 34.7 bits (78), Expect = 0.27
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 100 RKYHKLWLVYINRSHHIKSNQIHEHEKNARNTN--VNSELHRR-QHRQHDGDTE*DRHRS 270
R++HK H +S H+HE+ + T+ +SE++ +HR+ D D E DRHRS
Sbjct: 14 RRHHK-------SKHKKRSKSHHDHERPSTRTDRDKSSEVNNHGRHRERDRDRERDRHRS 66
>dbj|BAB68031.1| P0455H0310.22 [Oryza sativa (japonica cultivar-group)]
Length = 340
Score = 34.7 bits (78), Expect = 0.27
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +3
Query: 198 CELRTSSPATQTTRRRHRMRPPQIQLLRHREKEPAPTTVIDLEPRLRWRIERRRERWRRP 377
C T+S A TRR + + + RE+E A +++ R RW+ RRR R RRP
Sbjct: 217 CSAATTSAAASATRRPAAVWGERERDQGWREREAAAALTLEMRRRRRWQRRRRRRR-RRP 275
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,381,010
Number of Sequences: 1393205
Number of extensions: 8823557
Number of successful extensions: 43266
Number of sequences better than 10.0: 135
Number of HSP's better than 10.0 without gapping: 37618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42718
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
