Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010915A_C01 KMC010915A_c01
(456 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_078385.1| conserved hypothetical [Ureaplasma urealyticum]... 36 0.21
pir||S50324 hypothetical protein - tomato gi|667069|gb|AAA62272.... 33 1.8
gb|AAM18155.1|AC092172_15 Putative transposase [Oryza sativa (ja... 30 8.8
gb|AAL82674.1|AC092387_22 putative transposase [Oryza sativa (ja... 30 8.8
emb|CAD40515.1| OSJNBa0050F15.15 [Oryza sativa (japonica cultiva... 30 8.8
>ref|NP_078385.1| conserved hypothetical [Ureaplasma urealyticum]
gi|11356825|pir||F82877 conserved hypothetical UU547
[imported] - Ureaplasma urealyticum
gi|6899552|gb|AAF30960.1|AE002153_8 conserved
hypothetical [Ureaplasma urealyticum]
Length = 338
Score = 35.8 bits (81), Expect = 0.21
Identities = 17/45 (37%), Positives = 27/45 (59%)
Frame = +2
Query: 191 TRVTFDDYVIQLSGHTSSPILRIYVL*MTNLLVTQILAAITHYSF 325
TRVT + +I++ G PIL I++ MT+LL + A + HY +
Sbjct: 96 TRVTLEGILIKIGGLLFGPILGIFIGAMTDLLSVAMTAGVFHYGY 140
>pir||S50324 hypothetical protein - tomato gi|667069|gb|AAA62272.1| ORF
Length = 84
Score = 32.7 bits (73), Expect = 1.8
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = -2
Query: 386 YTQSAKANGFYVRRGEILRSQKNSELLQQEFV 291
Y A NGF VR+ I RS+K+ ++ QEFV
Sbjct: 35 YLDYAHRNGFSVRKNRISRSRKDKSIIGQEFV 66
>gb|AAM18155.1|AC092172_15 Putative transposase [Oryza sativa (japonica cultivar-group)]
Length = 663
Score = 30.4 bits (67), Expect = 8.8
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -2
Query: 386 YTQSAKANGFYVRRGEILRSQKNSELLQQEFV*QVSSSSRGRKFLR*ERRCDPR 225
Y AK GF VR+ ++ R K+ E++ ++FV + F R +R+ +PR
Sbjct: 111 YLGYAKGKGFSVRKNKLKR--KDGEIIWRQFVCSCEGHMELKHFERIDRKMEPR 162
>gb|AAL82674.1|AC092387_22 putative transposase [Oryza sativa (japonica cultivar-group)]
Length = 311
Score = 30.4 bits (67), Expect = 8.8
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -2
Query: 386 YTQSAKANGFYVRRGEILRSQKNSELLQQEFV*QVSSSSRGRKFLR*ERRCDPR 225
Y AK GF VR+ ++ R K+ E++ ++FV + F R +R+ +PR
Sbjct: 111 YLGYAKGKGFSVRKNKLKR--KDGEIIWRQFVCSCEGHMELKHFERIDRKMEPR 162
>emb|CAD40515.1| OSJNBa0050F15.15 [Oryza sativa (japonica cultivar-group)]
Length = 1134
Score = 30.4 bits (67), Expect = 8.8
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = -2
Query: 386 YTQSAKANGFYVRRGEILRSQKNSELLQQEFV*QVSSSSRGRKFLR*ERRCDPRA 222
Y AK GF VR+ + R K+ E++ ++FV + F R ER +PRA
Sbjct: 478 YLDYAKGKGFSVRKNNLKR--KDGEIIWRQFVCSCEGYRELKHFERTERIREPRA 530
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 320,537,667
Number of Sequences: 1393205
Number of extensions: 5476346
Number of successful extensions: 12748
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12746
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
