Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010909A_C01 KMC010909A_c01
(471 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00011118.1| hypothetical protein [Rhodopseudomonas palustris] 33 1.1
ref|NP_066198.2| NADH dehydrogenase subunit 4 [Schistosoma japon... 32 4.4
gb|AAL12147.1| NADH dehydrogenase subunit 4 [Schistosoma japonicum] 32 4.4
gb|AAL12139.1| NADH dehydrogenase subunit 4 [Schistosoma japonicum] 32 4.4
gb|AAL12155.1| NADH dehydrogenase subunit 4 [Schistosoma japonicum] 32 4.4
>gb|ZP_00011118.1| hypothetical protein [Rhodopseudomonas palustris]
Length = 566
Score = 33.5 bits (75), Expect = 1.1
Identities = 12/36 (33%), Positives = 22/36 (60%)
Frame = -1
Query: 183 VSYVPGIHVFVTCIIGQIIGGMNYGLVGCHNSMPYF 76
+ Y+ + V T ++ ++GG +GLV CH+ +P F
Sbjct: 89 LQYLKNMGVRATLVVSLVVGGKLWGLVACHHYLPRF 124
>ref|NP_066198.2| NADH dehydrogenase subunit 4 [Schistosoma japonicum]
gi|12248311|gb|AAG13138.2| NADH dehydrogenase subunit 4
[Schistosoma japonicum]
Length = 424
Score = 31.6 bits (70), Expect = 4.4
Identities = 26/67 (38%), Positives = 36/67 (52%), Gaps = 3/67 (4%)
Frame = -1
Query: 207 VTIGDRDLVSYVPGIHVFVTCIIGQIIGGMNYGLVGC---HNSMPYFDGLDSELSVLYVL 37
+T+GD + V I++F G IIG + YGLV C + S Y GLD+ L + L
Sbjct: 359 ITLGDIISLLLV-SIYIFS----GSIIGFIIYGLVICSPINTSYEYSGGLDNFLFCIMYL 413
Query: 36 SL*NTII 16
SL N I+
Sbjct: 414 SLLNLIL 420
>gb|AAL12147.1| NADH dehydrogenase subunit 4 [Schistosoma japonicum]
Length = 424
Score = 31.6 bits (70), Expect = 4.4
Identities = 26/67 (38%), Positives = 36/67 (52%), Gaps = 3/67 (4%)
Frame = -1
Query: 207 VTIGDRDLVSYVPGIHVFVTCIIGQIIGGMNYGLVGC---HNSMPYFDGLDSELSVLYVL 37
+T+GD + V I++F G IIG + YGLV C + S Y GLD+ L + L
Sbjct: 359 ITLGDIISLLLV-SIYIFS----GSIIGFIIYGLVICSPINTSYEYSGGLDNFLFCIMYL 413
Query: 36 SL*NTII 16
SL N I+
Sbjct: 414 SLLNLIL 420
>gb|AAL12139.1| NADH dehydrogenase subunit 4 [Schistosoma japonicum]
Length = 424
Score = 31.6 bits (70), Expect = 4.4
Identities = 26/67 (38%), Positives = 36/67 (52%), Gaps = 3/67 (4%)
Frame = -1
Query: 207 VTIGDRDLVSYVPGIHVFVTCIIGQIIGGMNYGLVGC---HNSMPYFDGLDSELSVLYVL 37
+T+GD + V I++F G IIG + YGLV C + S Y GLD+ L + L
Sbjct: 359 ITLGDIISLLLV-SIYIFS----GSIIGFIIYGLVICSPINTSYEYSGGLDNFLFCIMYL 413
Query: 36 SL*NTII 16
SL N I+
Sbjct: 414 SLLNLIL 420
>gb|AAL12155.1| NADH dehydrogenase subunit 4 [Schistosoma japonicum]
Length = 424
Score = 31.6 bits (70), Expect = 4.4
Identities = 26/67 (38%), Positives = 36/67 (52%), Gaps = 3/67 (4%)
Frame = -1
Query: 207 VTIGDRDLVSYVPGIHVFVTCIIGQIIGGMNYGLVGC---HNSMPYFDGLDSELSVLYVL 37
+T+GD + V I++F G IIG + YGLV C + S Y GLD+ L + L
Sbjct: 359 ITLGDIISLLLV-SIYIFS----GSIIGFIIYGLVICSPINTSYEYSGGLDNFLFCIMYL 413
Query: 36 SL*NTII 16
SL N I+
Sbjct: 414 SLLNLIL 420
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,949,661
Number of Sequences: 1393205
Number of extensions: 7516773
Number of successful extensions: 15935
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15925
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
