Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010898A_C01 KMC010898A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564870.1| copper homeostasis factor, putative; protein id... 123 1e-27
pir||T50778 copper chaperone homolog CCH [imported] - soybean gi... 118 4e-26
ref|NP_191183.1| copper homeostasis factor; protein id: At3g5624... 118 4e-26
pir||T50779 copper chaperone homolog CCH [imported] - rice gi|65... 110 1e-23
pir||D96687 hypothetical protein T6J19.6 [imported] - Arabidopsi... 108 2e-23
>ref|NP_564870.1| copper homeostasis factor, putative; protein id: At1g66240.1,
supported by cDNA: gi_14532547, supported by cDNA:
gi_18655400 [Arabidopsis thaliana]
gi|14532548|gb|AAK64002.1| At1g66240/T6J19_6
[Arabidopsis thaliana] gi|18655401|gb|AAL76156.1|
At1g66240/T6J19_6 [Arabidopsis thaliana]
Length = 106
Score = 123 bits (308), Expect = 1e-27
Identities = 58/70 (82%), Positives = 65/70 (92%)
Frame = -1
Query: 458 MSQTVVLKVGMSCEGCVGAVKRVLGKLEGVESYDIDLKEQKVVVKGNVQPDTVLQTVSKT 279
MSQTVVL+V M+CEGCVGAVKRVLGK+EGVES+D+D+KEQKV VKGNVQPD VLQTV+KT
Sbjct: 31 MSQTVVLRVAMTCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVQPDAVLQTVTKT 90
Query: 278 GKKTAFWGNE 249
GKKTAFW E
Sbjct: 91 GKKTAFWEAE 100
>pir||T50778 copper chaperone homolog CCH [imported] - soybean
gi|6525011|gb|AAF15286.1|AF198627_1 copper chaperone
homolog CCH [Glycine max]
Length = 130
Score = 118 bits (295), Expect = 4e-26
Identities = 56/69 (81%), Positives = 63/69 (91%)
Frame = -1
Query: 455 SQTVVLKVGMSCEGCVGAVKRVLGKLEGVESYDIDLKEQKVVVKGNVQPDTVLQTVSKTG 276
SQTVVLKVGMSC+GC GA+ RVLGK+EGVES+DIDLKEQKV VKGNV+PD VLQ VSK+G
Sbjct: 3 SQTVVLKVGMSCQGCAGAMNRVLGKMEGVESFDIDLKEQKVTVKGNVEPDEVLQAVSKSG 62
Query: 275 KKTAFWGNE 249
KKTAFW +E
Sbjct: 63 KKTAFWVDE 71
>ref|NP_191183.1| copper homeostasis factor; protein id: At3g56240.1, supported by
cDNA: 16647., supported by cDNA: gi_13605757, supported
by cDNA: gi_3168839 [Arabidopsis thaliana]
gi|11290104|pir||T47741 copper homeostasis factor
[imported] - Arabidopsis thaliana
gi|3168840|gb|AAC33510.1| copper homeostasis factor
[Arabidopsis thaliana] gi|7572922|emb|CAB87423.1| copper
homeostasis factor [Arabidopsis thaliana]
gi|13605758|gb|AAK32872.1|AF361860_1
AT3g56240/F18O21_200 [Arabidopsis thaliana]
gi|17978907|gb|AAL47423.1| AT3g56240/F18O21_200
[Arabidopsis thaliana] gi|21553785|gb|AAM62878.1| copper
homeostasis factor [Arabidopsis thaliana]
Length = 121
Score = 118 bits (295), Expect = 4e-26
Identities = 54/67 (80%), Positives = 63/67 (93%)
Frame = -1
Query: 458 MSQTVVLKVGMSCEGCVGAVKRVLGKLEGVESYDIDLKEQKVVVKGNVQPDTVLQTVSKT 279
M+QTVVLKVGMSC+GCVGAV RVLGK+EGVES+DID+KEQKV VKGNV+P+ V QTVSKT
Sbjct: 1 MAQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVEPEAVFQTVSKT 60
Query: 278 GKKTAFW 258
GKKT++W
Sbjct: 61 GKKTSYW 67
>pir||T50779 copper chaperone homolog CCH [imported] - rice
gi|6525009|gb|AAF15285.1|AF198626_1 copper chaperone
homolog CCH [Oryza sativa]
Length = 132
Score = 110 bits (274), Expect = 1e-23
Identities = 52/78 (66%), Positives = 68/78 (86%)
Frame = -1
Query: 455 SQTVVLKVGMSCEGCVGAVKRVLGKLEGVESYDIDLKEQKVVVKGNVQPDTVLQTVSKTG 276
++TVVLKVGMSC+GC GAV+RVL K+EGVE++DID+++QKV VKGNV+P+ V QTVSKTG
Sbjct: 3 AETVVLKVGMSCQGCAGAVRRVLTKMEGVETFDIDMEQQKVTVKGNVKPEDVFQTVSKTG 62
Query: 275 KKTAFWGNEVAPAATSTS 222
KKT+FW E A AA+ ++
Sbjct: 63 KKTSFW--EAAEAASDSA 78
>pir||D96687 hypothetical protein T6J19.6 [imported] - Arabidopsis thaliana
gi|12323573|gb|AAG51766.1|AC066691_6 copper homeostasis
factor, putative; 27145-26758 [Arabidopsis thaliana]
Length = 66
Score = 108 bits (271), Expect = 2e-23
Identities = 50/60 (83%), Positives = 56/60 (93%)
Frame = -1
Query: 428 MSCEGCVGAVKRVLGKLEGVESYDIDLKEQKVVVKGNVQPDTVLQTVSKTGKKTAFWGNE 249
M+CEGCVGAVKRVLGK+EGVES+D+D+KEQKV VKGNVQPD VLQTV+KTGKKTAFW E
Sbjct: 1 MTCEGCVGAVKRVLGKMEGVESFDVDIKEQKVTVKGNVQPDAVLQTVTKTGKKTAFWEAE 60
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 437,271,041
Number of Sequences: 1393205
Number of extensions: 9543462
Number of successful extensions: 28485
Number of sequences better than 10.0: 451
Number of HSP's better than 10.0 without gapping: 27225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28451
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
