Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010889A_C01 KMC010889A_c01
(467 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43154.1| unknown protein [Arabidopsis thaliana] 94 7e-19
ref|NP_174446.1| hypothetical protein; protein id: At1g31650.1 [... 94 7e-19
ref|NP_178104.1| hypothetical protein; protein id: At1g79860.1 [... 54 1e-06
dbj|BAB93322.1| OJ1117_G01.5 [Oryza sativa (japonica cultivar-gr... 50 1e-05
dbj|BAB61208.1| contains EST AU069857(E4450)~similar to Arabidop... 49 3e-05
>dbj|BAC43154.1| unknown protein [Arabidopsis thaliana]
Length = 576
Score = 94.0 bits (232), Expect = 7e-19
Identities = 59/124 (47%), Positives = 75/124 (59%), Gaps = 11/124 (8%)
Frame = -3
Query: 465 KVLYGQDIGHSLLEAYSRVLGNLAFSILSRIRDILQEDSFSNPHSPAA---------AIN 313
K+ Y +DIGH++LEAYSR L NLAF ILSR+ +IL+EDS SNP+SPA
Sbjct: 453 KIQYDKDIGHAVLEAYSRTLANLAFRILSRMGEILKEDSLSNPNSPAPPSCFPSSRDPYR 512
Query: 312 LSETWVVGSHVRHSLLDQMNQANGPCCDSSFDSTSDLELSIDAKSSVEI-ATPSRSS-AW 139
E ++ S VRHSL D MN+A+G F L DAK+S + TPSRSS W
Sbjct: 513 TPERPLLSSRVRHSLTDDMNKADGTETGLDF-------LFADAKASNSVNTTPSRSSRLW 565
Query: 138 CISR 127
C+S+
Sbjct: 566 CLSK 569
>ref|NP_174446.1| hypothetical protein; protein id: At1g31650.1 [Arabidopsis
thaliana] gi|12597851|gb|AAG60161.1|AC074360_26
hypothetical protein [Arabidopsis thaliana]
Length = 548
Score = 94.0 bits (232), Expect = 7e-19
Identities = 59/124 (47%), Positives = 75/124 (59%), Gaps = 11/124 (8%)
Frame = -3
Query: 465 KVLYGQDIGHSLLEAYSRVLGNLAFSILSRIRDILQEDSFSNPHSPAA---------AIN 313
K+ Y +DIGH++LEAYSR L NLAF ILSR+ +IL+EDS SNP+SPA
Sbjct: 425 KIQYDKDIGHAVLEAYSRTLANLAFRILSRMGEILKEDSLSNPNSPAPPSCFPSSRDPYR 484
Query: 312 LSETWVVGSHVRHSLLDQMNQANGPCCDSSFDSTSDLELSIDAKSSVEI-ATPSRSS-AW 139
E ++ S VRHSL D MN+A+G F L DAK+S + TPSRSS W
Sbjct: 485 TPERPLLSSRVRHSLTDDMNKADGTETGLDF-------LFADAKASNSVNTTPSRSSRLW 537
Query: 138 CISR 127
C+S+
Sbjct: 538 CLSK 541
>ref|NP_178104.1| hypothetical protein; protein id: At1g79860.1 [Arabidopsis
thaliana] gi|25349307|pir||F96829 hypothetical protein
F19K16.18 [imported] - Arabidopsis thaliana
gi|12324572|gb|AAG52233.1|AC011717_1 hypothetical
protein; 60088-62008 [Arabidopsis thaliana]
Length = 515
Score = 53.5 bits (127), Expect = 1e-06
Identities = 32/107 (29%), Positives = 57/107 (52%)
Frame = -3
Query: 465 KVLYGQDIGHSLLEAYSRVLGNLAFSILSRIRDILQEDSFSNPHSPAAAINLSETWVVGS 286
K+ + +D+G ++LE+YSR+L +LA+++LSRI D+L+ D N + + E +VGS
Sbjct: 399 KIQFNEDVGQAVLESYSRILESLAYTVLSRIDDVLEADRAGNKRN--TPLEAEEETLVGS 456
Query: 285 HVRHSLLDQMNQANGPCCDSSFDSTSDLELSIDAKSSVEIATPSRSS 145
+L D M ++ +S DL K + + T ++S
Sbjct: 457 ---MTLSDFMGWDFDQAANAELESKKDLPDDPLIKEKLSVVTTKKTS 500
>dbj|BAB93322.1| OJ1117_G01.5 [Oryza sativa (japonica cultivar-group)]
gi|21644632|dbj|BAC01191.1| P0485G01.25 [Oryza sativa
(japonica cultivar-group)]
Length = 566
Score = 50.1 bits (118), Expect = 1e-05
Identities = 20/41 (48%), Positives = 33/41 (79%)
Frame = -3
Query: 465 KVLYGQDIGHSLLEAYSRVLGNLAFSILSRIRDILQEDSFS 343
K+ Y +D+G+++LE+YSR L +LAF++LSRI D+L D+ +
Sbjct: 437 KIQYNKDVGYAILESYSRTLESLAFAVLSRIEDVLHADAIA 477
>dbj|BAB61208.1| contains EST AU069857(E4450)~similar to Arabidopsis thaliana
chromosome 1, F9I5.12~unknown protein [Oryza sativa
(japonica cultivar-group)] gi|20804665|dbj|BAB92353.1|
P0512C01.5 [Oryza sativa (japonica cultivar-group)]
Length = 521
Score = 48.9 bits (115), Expect = 3e-05
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 19/94 (20%)
Frame = -3
Query: 465 KVLYGQDIGHSLLEAYSRVLGNLAFSILSRIRDILQEDSFSN-------PHSPAAAINLS 307
K+ +D+G ++LE+YSRVL +LAF+++SRI D+L D + P +PA A + +
Sbjct: 379 KIQENRDVGFAILESYSRVLESLAFNVMSRIEDVLNADDHAREKAKKEAPPAPAMANDAA 438
Query: 306 E------------TWVVGSHVRHSLLDQMNQANG 241
E + GS +LLD M+ NG
Sbjct: 439 EHHHQQAGEVDAPCKMTGSPNGRTLLDFMDDWNG 472
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 425,503,715
Number of Sequences: 1393205
Number of extensions: 9140819
Number of successful extensions: 23382
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 22715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23371
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
