Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010879A_C01 KMC010879A_c01
(400 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL59029.1|AC087182_12 hypothetical protein [Oryza sativa] 39 0.016
dbj|BAB01298.1| contains similarity to transcription factor CA15... 39 0.020
ref|NP_188618.1| hypothetical protein; protein id: At3g19840.1 [... 39 0.020
emb|CAC16167.1| ribosome-inactivating protein [Zea mays] 39 0.020
pir||S11859 rRNA N-glycosidase (EC 3.2.2.22) precursor (b-32.129... 35 0.17
>gb|AAL59029.1|AC087182_12 hypothetical protein [Oryza sativa]
Length = 1099
Score = 38.9 bits (89), Expect = 0.016
Identities = 21/48 (43%), Positives = 28/48 (57%)
Frame = -3
Query: 392 KEREALWRRYAEDMVRRQKSAHDSREEKHTDAKGRNPLESSKLPPESR 249
K+RE++WRRYA+DM + K + D +E TD K R S PP R
Sbjct: 1057 KDRESIWRRYADDMKTKLKQS-DMKERSDTDGKQRR----SSDPPRRR 1099
>dbj|BAB01298.1| contains similarity to transcription factor CA150b~gene_id:MPN9.8
[Arabidopsis thaliana]
Length = 835
Score = 38.5 bits (88), Expect = 0.020
Identities = 17/35 (48%), Positives = 25/35 (70%)
Frame = -3
Query: 398 PRKEREALWRRYAEDMVRRQKSAHDSREEKHTDAK 294
PR++RE +WRRY ED+ R+Q+ + +EEK D K
Sbjct: 801 PRQDREVVWRRYVEDISRKQRH-ENYQEEKQRDYK 834
>ref|NP_188618.1| hypothetical protein; protein id: At3g19840.1 [Arabidopsis
thaliana]
Length = 830
Score = 38.5 bits (88), Expect = 0.020
Identities = 17/35 (48%), Positives = 25/35 (70%)
Frame = -3
Query: 398 PRKEREALWRRYAEDMVRRQKSAHDSREEKHTDAK 294
PR++RE +WRRY ED+ R+Q+ + +EEK D K
Sbjct: 796 PRQDREVVWRRYVEDISRKQRH-ENYQEEKQRDYK 829
>emb|CAC16167.1| ribosome-inactivating protein [Zea mays]
Length = 301
Score = 38.5 bits (88), Expect = 0.020
Identities = 23/65 (35%), Positives = 32/65 (48%), Gaps = 5/65 (7%)
Frame = +3
Query: 96 KH*TEHSENISILILISGFKVKRPNLW-----KTRGERLVIQKNYK*NYLLSLRSPPGLW 260
KH T+H I + + K P LW KTR + + YL++ R+P GLW
Sbjct: 49 KHCTDHK---GIFQPVLPPEKKVPELWFYTELKTRTSSMALAIRMDNLYLVAFRTPGGLW 105
Query: 261 WKFGR 275
WKFG+
Sbjct: 106 WKFGK 110
>pir||S11859 rRNA N-glycosidase (EC 3.2.2.22) precursor (b-32.129) - maize
gi|22188|emb|CAA49722.1| protein b-32 [Zea mays]
Length = 304
Score = 35.4 bits (80), Expect = 0.17
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Frame = +3
Query: 96 KH*TEHSENISILILISGFKVKRPNLW-----KTRGERLVIQKNYK*NYLLSLRSPPGLW 260
KH T+H I + + K P LW KTR + + YL+ R+P G+W
Sbjct: 49 KHCTDHK---GIFQPVLPPEKKVPELWFYTELKTRTSSITLAIRMDNLYLVGFRTPGGVW 105
Query: 261 WKFGR 275
W+FG+
Sbjct: 106 WEFGK 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 339,181,966
Number of Sequences: 1393205
Number of extensions: 6698624
Number of successful extensions: 19023
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 18637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18996
length of database: 448,689,247
effective HSP length: 108
effective length of database: 298,223,107
effective search space used: 7157354568
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
