Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010876A_C01 KMC010876A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC41326.1| unnamed protein product [Lotus japonicus] 176 1e-43
ref|NP_177466.1| putative transcription factor BTF3 (RNA polymer... 167 1e-40
gb|AAM61406.1| putative transcription factor BTF3 (RNA polymeras... 166 2e-40
ref|NP_173230.1| transcription factor, putative; protein id: At1... 165 4e-40
gb|AAL15298.1| At1g17880/F2H15_10 [Arabidopsis thaliana] 165 4e-40
>dbj|BAC41326.1| unnamed protein product [Lotus japonicus]
Length = 142
Score = 176 bits (447), Expect = 1e-43
Identities = 93/107 (86%), Positives = 94/107 (86%)
Frame = -2
Query: 545 VNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPSIIPQLGPDNLENLKKLA 366
VNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTK+ PDNLENLKKLA
Sbjct: 49 VNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKR-------------PDNLENLKKLA 95
Query: 365 EQFQKQAPEAGAADSTAAQEENDDDVPELVPGETFETVAEEETKATS 225
EQFQKQAPEAGAADSTAAQEENDDDVPELVPGETFETVAEEETKATS
Sbjct: 96 EQFQKQAPEAGAADSTAAQEENDDDVPELVPGETFETVAEEETKATS 142
>ref|NP_177466.1| putative transcription factor BTF3 (RNA polymerase B transcription
factor 3); protein id: At1g73230.1, supported by cDNA:
119220., supported by cDNA: gi_13877980, supported by
cDNA: gi_17104708 [Arabidopsis thaliana]
gi|25296158|pir||D96758 hypothetical protein T18K17.10
[imported] - Arabidopsis thaliana
gi|12324314|gb|AAG52123.1|AC010556_5 putative
transcription factor BTF3 (RNA polymerase B
transcription factor 3); 26343-27201 [Arabidopsis
thaliana] gi|13877981|gb|AAK44068.1|AF370253_1 putative
RNA polymerase B transcription factor BTF3 [Arabidopsis
thaliana] gi|17104709|gb|AAL34243.1| putative RNA
polymerase B transcription factor 3 [Arabidopsis
thaliana]
Length = 165
Score = 167 bits (422), Expect = 1e-40
Identities = 83/102 (81%), Positives = 90/102 (87%)
Frame = -2
Query: 545 VNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPSIIPQLGPDNLENLKKLA 366
VNIFKDDVVIQF+NPKVQASIAANTWVVSG PQTKKLQDILP II QLGPDNL+NLKKLA
Sbjct: 57 VNIFKDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLA 116
Query: 365 EQFQKQAPEAGAADSTAAQEENDDDVPELVPGETFETVAEEE 240
EQFQKQAP AG +T +E++DDDVP+LV GETFET A EE
Sbjct: 117 EQFQKQAPGAGDVPATIQEEDDDDDVPDLVVGETFETPATEE 158
>gb|AAM61406.1| putative transcription factor BTF3 (RNA polymerase B transcription
factor 3) [Arabidopsis thaliana]
Length = 165
Score = 166 bits (419), Expect = 2e-40
Identities = 83/102 (81%), Positives = 89/102 (86%)
Frame = -2
Query: 545 VNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPSIIPQLGPDNLENLKKLA 366
VNIFKDDVVIQF+NPKVQASIAANTWVVSG PQTKKLQDILP II QLGPDNL+NLKKLA
Sbjct: 57 VNIFKDDVVIQFINPKVQASIAANTWVVSGTPQTKKLQDILPQIISQLGPDNLDNLKKLA 116
Query: 365 EQFQKQAPEAGAADSTAAQEENDDDVPELVPGETFETVAEEE 240
EQFQKQAP AG T +E++DDDVP+LV GETFET A EE
Sbjct: 117 EQFQKQAPGAGDVPVTIQEEDDDDDVPDLVVGETFETPATEE 158
>ref|NP_173230.1| transcription factor, putative; protein id: At1g17880.1, supported
by cDNA: 1105., supported by cDNA: gi_12083221,
supported by cDNA: gi_15027872, supported by cDNA:
gi_16323126, supported by cDNA: gi_19310722 [Arabidopsis
thaliana] gi|25296159|pir||A86314 probable BTF3b factor
protein - Arabidopsis thaliana
gi|5912424|emb|CAB56149.1| BTF3b-like factor
[Arabidopsis thaliana]
gi|9665066|gb|AAF97268.1|AC034106_11 Strong similarity
(practically identical) to BTF3b-like factor from
Arabidopsis thaliana gb|AJ242970 and contains a NAC
PF|01849 domain. ESTs gb|AV530384, gb|AV533391,
gb|AV521165, gb|AV554398, gb|AV527846, gb|BE038323,
gb|T76806, gb|AI998200, gb|AI100073 come from this gene
gi|12083222|gb|AAG48770.1|AF332407_1 putative
transcription factor [Arabidopsis thaliana]
gi|15027873|gb|AAK76467.1| putative transcription factor
[Arabidopsis thaliana] gi|19310723|gb|AAL85092.1|
putative transcription factor [Arabidopsis thaliana]
gi|21536758|gb|AAM61090.1| transcription factor,
putative [Arabidopsis thaliana]
Length = 165
Score = 165 bits (417), Expect = 4e-40
Identities = 85/107 (79%), Positives = 92/107 (85%)
Frame = -2
Query: 545 VNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPSIIPQLGPDNLENLKKLA 366
VNIFKDDVVIQF+NPKVQASIAANTWVVSG+PQTKKLQDILP II QLGPDN++NLKKLA
Sbjct: 57 VNIFKDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLA 116
Query: 365 EQFQKQAPEAGAADSTAAQEENDDDVPELVPGETFETVAEEETKATS 225
EQFQKQA G A S QEE+DDDVPELV GETFET AEE+ A +
Sbjct: 117 EQFQKQASGEGNAASATIQEEDDDDVPELV-GETFETAAEEKAPAAA 162
>gb|AAL15298.1| At1g17880/F2H15_10 [Arabidopsis thaliana]
Length = 165
Score = 165 bits (417), Expect = 4e-40
Identities = 85/107 (79%), Positives = 92/107 (85%)
Frame = -2
Query: 545 VNIFKDDVVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPSIIPQLGPDNLENLKKLA 366
VNIFKDDVVIQF+NPKVQASIAANTWVVSG+PQTKKLQDILP II QLGPDN++NLKKLA
Sbjct: 57 VNIFKDDVVIQFINPKVQASIAANTWVVSGSPQTKKLQDILPQIISQLGPDNMDNLKKLA 116
Query: 365 EQFQKQAPEAGAADSTAAQEENDDDVPELVPGETFETVAEEETKATS 225
EQFQKQA G A S QEE+DDDVPELV GETFET AEE+ A +
Sbjct: 117 EQFQKQASGEGNAASATIQEEDDDDVPELV-GETFETAAEEKAPAAA 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,240,324
Number of Sequences: 1393205
Number of extensions: 9285799
Number of successful extensions: 36695
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 30818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34531
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
