Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010852A_C01 KMC010852A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177189.1| ubiquitin-protein ligase 2 (UPL2), putative; pr... 214 9e-55
gb|AAF36455.1|AF127565_1 ubiquitin-protein ligase 2 [Arabidopsis... 214 9e-55
gb|AAN72076.1| Unknown protein [Arabidopsis thaliana] 214 9e-55
ref|NP_175982.1| ubiquitin-protein ligase 1 (UPL1), putative; pr... 211 4e-54
gb|AAF36454.1|AF127564_1 ubiquitin-protein ligase 1 [Arabidopsis... 211 4e-54
>ref|NP_177189.1| ubiquitin-protein ligase 2 (UPL2), putative; protein id: At1g70320.1
[Arabidopsis thaliana]
Length = 3658
Score = 214 bits (544), Expect = 9e-55
Identities = 102/126 (80%), Positives = 112/126 (87%)
Frame = -3
Query: 600 ELLISGLPDIDLDDLRANTEYSGYSTGSPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVP 421
ELLISGLP+ID DDL+ANTEY+ Y+ GSPVI+WFWEVV+ FSKED AR LQFVTGTSKVP
Sbjct: 3532 ELLISGLPEIDFDDLKANTEYTSYTVGSPVIRWFWEVVKAFSKEDMARFLQFVTGTSKVP 3591
Query: 420 LEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKLHLEERLLLAIHEA 241
LEGF ALQGISG Q+ QIHKAYGS + LPSAHTCFNQLDLPEY SK ++ERLLLAIHEA
Sbjct: 3592 LEGFKALQGISGPQRLQIHKAYGSPERLPSAHTCFNQLDLPEYQSKEQVQERLLLAIHEA 3651
Query: 240 NEGFGF 223
NEGFGF
Sbjct: 3652 NEGFGF 3657
>gb|AAF36455.1|AF127565_1 ubiquitin-protein ligase 2 [Arabidopsis thaliana]
Length = 3658
Score = 214 bits (544), Expect = 9e-55
Identities = 102/126 (80%), Positives = 112/126 (87%)
Frame = -3
Query: 600 ELLISGLPDIDLDDLRANTEYSGYSTGSPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVP 421
ELLISGLP+ID DDL+ANTEY+ Y+ GSPVI+WFWEVV+ FSKED AR LQFVTGTSKVP
Sbjct: 3532 ELLISGLPEIDFDDLKANTEYTSYTVGSPVIRWFWEVVKAFSKEDMARFLQFVTGTSKVP 3591
Query: 420 LEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKLHLEERLLLAIHEA 241
LEGF ALQGISG Q+ QIHKAYGS + LPSAHTCFNQLDLPEY SK ++ERLLLAIHEA
Sbjct: 3592 LEGFKALQGISGPQRLQIHKAYGSPERLPSAHTCFNQLDLPEYQSKEQVQERLLLAIHEA 3651
Query: 240 NEGFGF 223
NEGFGF
Sbjct: 3652 NEGFGF 3657
>gb|AAN72076.1| Unknown protein [Arabidopsis thaliana]
Length = 344
Score = 214 bits (544), Expect = 9e-55
Identities = 102/126 (80%), Positives = 112/126 (87%)
Frame = -3
Query: 600 ELLISGLPDIDLDDLRANTEYSGYSTGSPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVP 421
ELLISGLP+ID DDL+ANTEY+ Y+ GSPVI+WFWEVV+ FSKED AR LQFVTGTSKVP
Sbjct: 218 ELLISGLPEIDFDDLKANTEYTSYTVGSPVIRWFWEVVKAFSKEDMARFLQFVTGTSKVP 277
Query: 420 LEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKLHLEERLLLAIHEA 241
LEGF ALQGISG Q+ QIHKAYGS + LPSAHTCFNQLDLPEY SK ++ERLLLAIHEA
Sbjct: 278 LEGFKALQGISGPQRLQIHKAYGSPERLPSAHTCFNQLDLPEYQSKEQVQERLLLAIHEA 337
Query: 240 NEGFGF 223
NEGFGF
Sbjct: 338 NEGFGF 343
>ref|NP_175982.1| ubiquitin-protein ligase 1 (UPL1), putative; protein id: At1g55860.1
[Arabidopsis thaliana]
Length = 3891
Score = 211 bits (538), Expect = 4e-54
Identities = 101/126 (80%), Positives = 111/126 (87%)
Frame = -3
Query: 600 ELLISGLPDIDLDDLRANTEYSGYSTGSPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVP 421
ELLISGLP+ID DDL+ANTEY+ Y+ GSPVI WFWEVV+ FSKED AR LQFVTGTSKVP
Sbjct: 3765 ELLISGLPEIDFDDLKANTEYTSYTAGSPVIHWFWEVVKAFSKEDMARFLQFVTGTSKVP 3824
Query: 420 LEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKLHLEERLLLAIHEA 241
LEGF ALQGISG Q+ QIHKAYG+ + LPSAHTCFNQLDLPEY SK L+ERLLLAIHEA
Sbjct: 3825 LEGFKALQGISGPQRLQIHKAYGAPERLPSAHTCFNQLDLPEYQSKEQLQERLLLAIHEA 3884
Query: 240 NEGFGF 223
+EGFGF
Sbjct: 3885 SEGFGF 3890
>gb|AAF36454.1|AF127564_1 ubiquitin-protein ligase 1 [Arabidopsis thaliana]
Length = 3681
Score = 211 bits (538), Expect = 4e-54
Identities = 101/126 (80%), Positives = 111/126 (87%)
Frame = -3
Query: 600 ELLISGLPDIDLDDLRANTEYSGYSTGSPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVP 421
ELLISGLP+ID DDL+ANTEY+ Y+ GSPVI WFWEVV+ FSKED AR LQFVTGTSKVP
Sbjct: 3555 ELLISGLPEIDFDDLKANTEYTSYTAGSPVIHWFWEVVKAFSKEDMARFLQFVTGTSKVP 3614
Query: 420 LEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPEYPSKLHLEERLLLAIHEA 241
LEGF ALQGISG Q+ QIHKAYG+ + LPSAHTCFNQLDLPEY SK L+ERLLLAIHEA
Sbjct: 3615 LEGFKALQGISGPQRLQIHKAYGAPERLPSAHTCFNQLDLPEYQSKEQLQERLLLAIHEA 3674
Query: 240 NEGFGF 223
+EGFGF
Sbjct: 3675 SEGFGF 3680
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,461,909
Number of Sequences: 1393205
Number of extensions: 11827573
Number of successful extensions: 34863
Number of sequences better than 10.0: 329
Number of HSP's better than 10.0 without gapping: 33805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34496
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
