Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010848A_C01 KMC010848A_c01
(741 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189916.1| guanine nucleotide-exchange - like protein; pro... 158 7e-38
ref|NP_191645.1| guanine nucleotide exchange factor - like prote... 50 4e-05
gb|AAM00191.1|AF262215_1 guanine nucleotide-exchange protein GEP... 47 4e-04
ref|NP_171698.1| hypothetical protein; protein id: At1g01960.1 [... 45 8e-04
gb|EAA14874.1| ebiP6433 [Anopheles gambiae str. PEST] 42 0.009
>ref|NP_189916.1| guanine nucleotide-exchange - like protein; protein id: At3g43300.1
[Arabidopsis thaliana] gi|11357321|pir||T49244 guanine
nucleotide-exchange-like protein - Arabidopsis thaliana
gi|7649370|emb|CAB89051.1| guanine
nucleotide-exchange-like protein [Arabidopsis thaliana]
Length = 1669
Score = 158 bits (400), Expect = 7e-38
Identities = 89/147 (60%), Positives = 102/147 (68%), Gaps = 4/147 (2%)
Frame = -1
Query: 429 AAGGFLTRAFDSMLKECSGKKFPELQKAIQNFTDITKEASQRKQS---EPNQAAPSPESA 259
AAGGFLTRAFD+MLKE GKKFP+LQKAIQ + D +K +Q S E +QA E
Sbjct: 2 AAGGFLTRAFDTMLKESGGKKFPDLQKAIQAYQDGSKVVTQAAPSSIVESSQAEGGGEKT 61
Query: 258 SANETEDGAVTKPE-ADQSHKAYSGNITVILANAGNALEGADAELVLNPLRLAFETKSLK 82
E VT E A Q+ ++ S I V LANAG+ L GA+ ELVL PLRLAFETK+LK
Sbjct: 62 GVEADEPQKVTSAEVAQQASQSKSETINVSLANAGHTLGGAEVELVLKPLRLAFETKNLK 121
Query: 81 ILEPALDCLHILIAYDHLEGDPGLDGG 1
I + ALDCLH LIAYDHLEGDPGLDGG
Sbjct: 122 IFDAALDCLHKLIAYDHLEGDPGLDGG 148
>ref|NP_191645.1| guanine nucleotide exchange factor - like protein; protein id:
At3g60860.1 [Arabidopsis thaliana]
gi|11357320|pir||T47897 guanine nucleotide exchange
factor-like protein - Arabidopsis thaliana
gi|7329696|emb|CAB82690.1| guanine nucleotide exchange
factor-like protein [Arabidopsis thaliana]
Length = 1793
Score = 49.7 bits (117), Expect = 4e-05
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Frame = -1
Query: 414 LTRAFDSMLKECSGKKFPELQKAIQNFTDITKEASQRKQSEPNQAAPSPESASANETE-D 238
+T A + ++K S +K +L K +R S Q +P P S++A ++E +
Sbjct: 14 VTPALEKIVKNASWRKHSKLANEC-------KAVIERLNSL--QKSPPPSSSAATDSESE 64
Query: 237 GAVTKPEADQSHKAYSGNITVILANAGNALEGADAELVLNPLRLAFETKSLKILEPALDC 58
+V P D YS AD+EL+ +PL A T KI+EPA+DC
Sbjct: 65 SSVPGPLNDGGSIEYSL---------------ADSELIFSPLINACGTGLAKIIEPAIDC 109
Query: 57 LHILIAYDHLEGDPGLDGG 1
+ LIA+ ++ G+ GG
Sbjct: 110 IQKLIAHGYIRGESDPSGG 128
>gb|AAM00191.1|AF262215_1 guanine nucleotide-exchange protein GEP2 [Oryza sativa]
Length = 1789
Score = 46.6 bits (109), Expect = 4e-04
Identities = 49/175 (28%), Positives = 69/175 (39%), Gaps = 2/175 (1%)
Frame = -1
Query: 525 AFPPISIPDSTPSLICASI*LLARECVKMAGGAAGGFLTRAFDSMLKECSGKKFPELQKA 346
A PP + P+S P L+ A + L + ++K S + KA
Sbjct: 6 AAPPPTPPESDPRLVEAFVPFL--------------------EKLIKNASWRN-----KA 40
Query: 345 IQNFTDITKEASQRKQSEPNQAAPSPESASANETEDGAVTKPEADQSHKAYSGNITVILA 166
+ K R Q+ P P P +A A T T P S + G +
Sbjct: 41 HSKLSHTAKSILDRLQNPP----PPPAAAQAPSTP----TSPTTPTSSSSQPGPL----- 87
Query: 165 NAGNALEGADAELVLNPLRLAFETKSLKILEPALDCLHILIA--YDHLEGDPGLD 7
+L AD+EL+L P+ A + S K+ E L+ LH LIA Y H E DP D
Sbjct: 88 ---RSLSLADSELLLGPINSALGSGSAKLAEAGLELLHRLIAHSYIHGEADPSAD 139
>ref|NP_171698.1| hypothetical protein; protein id: At1g01960.1 [Arabidopsis
thaliana] gi|25518540|pir||E86151 hypothetical protein
F22M8.9 - Arabidopsis thaliana
gi|8570447|gb|AAF76474.1|AC020622_8 Contains similarity
to a guanine nucleotide exchange factor from Homo
sapiens gb|AF111162 and contains a Sec7 PF|01369 domain.
[Arabidopsis thaliana]
Length = 1750
Score = 45.4 bits (106), Expect = 8e-04
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Frame = -1
Query: 363 PELQKAIQN--FTDITKEASQRKQSEPNQAAPSPESASANETEDGAVTKPEADQSHKAYS 190
P L K I+N + +K A + K +P S A+ ++ P D YS
Sbjct: 16 PALDKVIKNASWRKHSKLAHECKSVIERLRSPENSSPVADSESGSSIPGPLHDGGAAEYS 75
Query: 189 GNITVILANAGNALEGADAELVLNPLRLAFETKSLKILEPALDCLHILIAYDHLEGDPGL 10
A++E++L+PL A T LKI++PA+DC+ LIA+ ++ G+
Sbjct: 76 L---------------AESEIILSPLINASSTGVLKIVDPAVDCIQKLIAHGYVRGEADP 120
Query: 9 DGG 1
GG
Sbjct: 121 TGG 123
>gb|EAA14874.1| ebiP6433 [Anopheles gambiae str. PEST]
Length = 1521
Score = 42.0 bits (97), Expect = 0.009
Identities = 39/136 (28%), Positives = 58/136 (41%), Gaps = 3/136 (2%)
Frame = -1
Query: 417 FLTRAFDSMLKECSGKKFPELQ---KAIQNFTDITKEASQRKQSEPNQAAPSPESASANE 247
F+ RA + +L + K+ LQ DI +E Q ++ N P P +A
Sbjct: 2 FILRALEKILSDKDIKRSHHLQLKRACDVALEDIKEELKQAGHTDTNGETPVPSAA---- 57
Query: 246 TEDGAVTKPEADQSHKAYSGNITVILANAGNALEGADAELVLNPLRLAFETKSLKILEPA 67
+ P+ D SGNI +AE P LA ++++ +I+ A
Sbjct: 58 -----LPLPKND------SGNII-------------NAEKYFLPFELACQSRTPRIVVTA 93
Query: 66 LDCLHILIAYDHLEGD 19
LDCL LIAY HL G+
Sbjct: 94 LDCLQKLIAYGHLTGN 109
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 605,122,877
Number of Sequences: 1393205
Number of extensions: 12694886
Number of successful extensions: 44070
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 41439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44002
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
