Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010839A_C01 KMC010839A_c01
(492 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187396.1| hypothetical protein; protein id: At3g07400.1 [... 127 5e-29
gb|EAA36534.1| predicted protein [Neurospora crassa] 34 1.00
sp|P02836|HMEN_DROME Segmentation polarity homeobox protein engr... 32 3.8
ref|NP_523700.2| engrailed CG9015-PA gi|24652772|ref|NP_725059.1... 32 3.8
ref|NP_602305.1| Ca2+-channel protein alpha1 subunit D CG4894-PA... 32 4.9
>ref|NP_187396.1| hypothetical protein; protein id: At3g07400.1 [Arabidopsis thaliana]
gi|6041840|gb|AAF02149.1|AC009853_9 hypothetical protein
[Arabidopsis thaliana]
Length = 1003
Score = 127 bits (320), Expect = 5e-29
Identities = 64/108 (59%), Positives = 87/108 (80%)
Frame = -3
Query: 487 KLIFAPINFVRSPFQKKEIVLPAEGVNSLCQQIHRVLHSHEESSFQEFARDRLTMELARE 308
K+IFAP++ V+ PFQ+K+ V P +GVNSLC+ +HRVL + EE+ F+E ARDRL +ELA++
Sbjct: 901 KMIFAPLDLVKKPFQRKDTVFPVDGVNSLCELVHRVLQTQEEACFEELARDRLLVELAKD 960
Query: 307 PAMSIDASSQARAKTASFNSAAVGASLGAGLGVVLAIVMGAASALRKP 164
+D S +AK++S ++AAVGASLGAGLG+VLA+VMGA SALRKP
Sbjct: 961 RV--VDGS---QAKSSSMSAAAVGASLGAGLGLVLAVVMGAGSALRKP 1003
>gb|EAA36534.1| predicted protein [Neurospora crassa]
Length = 564
Score = 33.9 bits (76), Expect = 1.00
Identities = 23/59 (38%), Positives = 35/59 (58%), Gaps = 5/59 (8%)
Frame = -3
Query: 298 SIDASSQARAKTAS---FNSAA-VGASLGAGLGVV-LAIVMGAASALRKP*GSNSSSNV 137
S D + A A++AS F+S A +G +G GLGVV L ++M A R+ NS++N+
Sbjct: 392 SADMGTAATAESASGGGFSSGAKIGVGVGVGLGVVALGVIMAAFFLFRRNNNKNSNTNL 450
>sp|P02836|HMEN_DROME Segmentation polarity homeobox protein engrailed
gi|72258|pir||WJFFEN homeotic protein engrailed - fruit
fly (Drosophila melanogaster) gi|763443|gb|AAA65478.1|
engrailed protein
Length = 552
Score = 32.0 bits (71), Expect = 3.8
Identities = 17/57 (29%), Positives = 30/57 (51%)
Frame = -3
Query: 397 QQIHRVLHSHEESSFQEFARDRLTMELAREPAMSIDASSQARAKTASFNSAAVGASL 227
QQ ++ H H+ Q+ + +L + PAM+ DA++ A A A+ + A A+L
Sbjct: 32 QQQQQMQHLHQLQQLQQLHQQQLAAGVFHHPAMAFDAAAAAAAAAAAAAAHAHAAAL 88
>ref|NP_523700.2| engrailed CG9015-PA gi|24652772|ref|NP_725059.1| engrailed
CG9015-PB gi|7303586|gb|AAF58639.1| CG9015-PA
[Drosophila melanogaster] gi|17862232|gb|AAL39593.1|
LD16125p [Drosophila melanogaster]
gi|21627438|gb|AAM68711.1| CG9015-PB [Drosophila
melanogaster]
Length = 552
Score = 32.0 bits (71), Expect = 3.8
Identities = 17/57 (29%), Positives = 30/57 (51%)
Frame = -3
Query: 397 QQIHRVLHSHEESSFQEFARDRLTMELAREPAMSIDASSQARAKTASFNSAAVGASL 227
QQ ++ H H+ Q+ + +L + PAM+ DA++ A A A+ + A A+L
Sbjct: 32 QQQQQMQHLHQLQQLQQLHQQQLAAGVFHHPAMAFDAAAAAAAAAAAAAAHAHAAAL 88
>ref|NP_602305.1| Ca2+-channel protein alpha1 subunit D CG4894-PA
gi|7287948|gb|AAF44986.1|AE003406_191 symbol=Ca-alpha1D;
synonym=BG:DS02795.1; match=method:''sim4'',
score:''1000.0'', desc:''GenBank::U00690:2 Ca-&agr;1D
FBgn0001991 PID:g457927 SPTREMBL:Q24270'',
species:''Drosophila melanogaster'';
match=method:''BLASTX'', version:''2.0a19MP-WashU
[05-Feb-1998] [Build sol2.5-ultra 01:47:30
05-Feb-1998]'', score:''897.0'',
desc:''trEMBL::Q13916:NEUROENDOCRINE/BETA-CELL-TYPE
CALCIUM CHANNEL ALPHA 1 SUBUNIT. organism:HOMO SAPIENS
(HUMAN). dbxref:GenBank; M83566; g179752; -.'',
species:''HOMO SAPIENS gi|7298274|gb|AAF53504.1|
CG4894-PA [Drosophila melanogaster]
Length = 2516
Score = 31.6 bits (70), Expect = 4.9
Identities = 20/58 (34%), Positives = 28/58 (47%), Gaps = 1/58 (1%)
Frame = -3
Query: 313 REPAMSIDASSQARAKTASFNSAAVGASLGAGLGVVLAIVM-GAASALRKP*GSNSSS 143
R P +++ + +AS S+ GA L AGLG V+ + SAL P SN S
Sbjct: 71 RSPTITLPVPANPLTTSASAGSSPTGAGLAAGLGTASGTVLQQSCSALDPPEDSNQPS 128
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,134,550
Number of Sequences: 1393205
Number of extensions: 8330375
Number of successful extensions: 28560
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 26768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28425
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
