Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010834A_C01 KMC010834A_c01
(441 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB90399.1| putative ARF GAP-like zinc finger-containing pro... 49 1e-05
pir||T00722 hypothetical protein F22O13.17 - Arabidopsis thaliana 49 1e-05
gb|AAL91192.1| unknown protein [Arabidopsis thaliana] 49 1e-05
ref|NP_172344.1| unknown protein; protein id: At1g08680.1 [Arabi... 49 1e-05
gb|AAG17005.1|AF184145_1 ARF GAP-like zinc finger-containing pro... 49 1e-05
>dbj|BAB90399.1| putative ARF GAP-like zinc finger-containing protein ZiGA4 [Oryza
sativa (japonica cultivar-group)]
Length = 748
Score = 48.9 bits (115), Expect = 1e-05
Identities = 19/29 (65%), Positives = 26/29 (89%)
Frame = +1
Query: 355 MASRKEDEKNERVIRGLLKLESNRRCINC 441
M SR+E+E+NE++IRGL+KL NR+CINC
Sbjct: 1 MGSRREEERNEKIIRGLMKLPPNRKCINC 29
>pir||T00722 hypothetical protein F22O13.17 - Arabidopsis thaliana
Length = 106
Score = 48.9 bits (115), Expect = 1e-05
Identities = 19/29 (65%), Positives = 26/29 (89%)
Frame = +1
Query: 355 MASRKEDEKNERVIRGLLKLESNRRCINC 441
M S++E+E+NE++IRGL+KL NRRCINC
Sbjct: 2 MGSKREEERNEKIIRGLMKLPPNRRCINC 30
>gb|AAL91192.1| unknown protein [Arabidopsis thaliana]
Length = 648
Score = 48.9 bits (115), Expect = 1e-05
Identities = 19/29 (65%), Positives = 26/29 (89%)
Frame = +1
Query: 355 MASRKEDEKNERVIRGLLKLESNRRCINC 441
M S++E+E+NE++IRGL+KL NRRCINC
Sbjct: 2 MGSKREEERNEKIIRGLMKLPPNRRCINC 30
>ref|NP_172344.1| unknown protein; protein id: At1g08680.1 [Arabidopsis thaliana]
Length = 159
Score = 48.9 bits (115), Expect = 1e-05
Identities = 19/29 (65%), Positives = 26/29 (89%)
Frame = +1
Query: 355 MASRKEDEKNERVIRGLLKLESNRRCINC 441
M S++E+E+NE++IRGL+KL NRRCINC
Sbjct: 2 MGSKREEERNEKIIRGLMKLPPNRRCINC 30
>gb|AAG17005.1|AF184145_1 ARF GAP-like zinc finger-containing protein ZiGA4 [Arabidopsis
thaliana]
Length = 649
Score = 48.9 bits (115), Expect = 1e-05
Identities = 19/29 (65%), Positives = 26/29 (89%)
Frame = +1
Query: 355 MASRKEDEKNERVIRGLLKLESNRRCINC 441
M S++E+E+NE++IRGL+KL NRRCINC
Sbjct: 2 MGSKREEERNEKIIRGLMKLPPNRRCINC 30
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,363,950
Number of Sequences: 1393205
Number of extensions: 8104425
Number of successful extensions: 38673
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 34372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38356
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
