Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010832A_C01 KMC010832A_c01
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181490.1| unknown protein; protein id: At2g39580.1 [Arabi... 39 0.063
gb|ZP_00012696.1| hypothetical protein [Rhodopseudomonas palustris] 33 2.6
gb|EAA21325.1| hypothetical protein [Plasmodium yoelii yoelii] 33 4.5
ref|NP_739320.1| putative PS1 protein [Corynebacterium efficiens... 32 5.9
>ref|NP_181490.1| unknown protein; protein id: At2g39580.1 [Arabidopsis thaliana]
gi|7452425|pir||T00568 hypothetical protein At2g39580
[imported] - Arabidopsis thaliana
gi|3355487|gb|AAC27849.1| unknown protein [Arabidopsis
thaliana]
Length = 1567
Score = 38.9 bits (89), Expect = 0.063
Identities = 26/83 (31%), Positives = 41/83 (49%)
Frame = -3
Query: 435 IKRIWNQYATNATHNRRIDVAGEIIVPWLYSVWQVHDPPYGRRMVTTDDGNSCGNWIQKK 256
I+ IWNQYA A D+A E++ W SVW V Y ++G+ N ++
Sbjct: 1230 IQCIWNQYAEYALEGGSYDLARELMSRWYGSVWDVLSHKYKTVRGNEEEGDD--NMLESA 1287
Query: 255 IHTH*VLVSY*QMDMMFGLTSSS 187
+ + V+ Q+D+MFG + S
Sbjct: 1288 LSD--LNVASDQVDVMFGYLNLS 1308
>gb|ZP_00012696.1| hypothetical protein [Rhodopseudomonas palustris]
Length = 483
Score = 33.5 bits (75), Expect = 2.6
Identities = 17/61 (27%), Positives = 31/61 (49%)
Frame = -3
Query: 450 INNPGIKRIWNQYATNATHNRRIDVAGEIIVPWLYSVWQVHDPPYGRRMVTTDDGNSCGN 271
I + G++ +W+ + HNR V G +V L W++ + + +V D G++ GN
Sbjct: 332 IVDAGMRELWH---SGVMHNRVRMVVGSFLVKHLLIDWRLGEQWFWDTLVDADPGSNPGN 388
Query: 270 W 268
W
Sbjct: 389 W 389
>gb|EAA21325.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2112
Score = 32.7 bits (73), Expect = 4.5
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 89 SSEHDNNLCFPALKSKNLALVVNCFMNHLTQTLLELVNPNIIS 217
++ NN C +SKNL VV+ H T T ++NPN I+
Sbjct: 1460 NNSSSNNKCSIEKESKNLKDVVHDDFEHTTMTTFTIINPNTIT 1502
>ref|NP_739320.1| putative PS1 protein [Corynebacterium efficiens YS-314]
gi|23494554|dbj|BAC19520.1| putative PS1 protein
[Corynebacterium efficiens YS-314]
Length = 360
Score = 32.3 bits (72), Expect = 5.9
Identities = 10/37 (27%), Positives = 24/37 (64%)
Frame = +2
Query: 299 VTILLPYGGSCTCHTEYNHGTIISPATSILRLWVAFV 409
+T+++P GG+ + + ++NH +S A ++ +W F+
Sbjct: 138 ITLVMPVGGAGSFYADWNHPATLSSAEPVVYMWETFL 174
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 546,784,525
Number of Sequences: 1393205
Number of extensions: 11075171
Number of successful extensions: 24249
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24249
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
