Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010818A_C01 KMC010818A_c01
(626 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568314.1| HSP100/ClpB, putative; protein id: At5g15450.1 ... 62 6e-09
gb|ZP_00110302.1| hypothetical protein [Nostoc punctiforme] 52 6e-06
ref|NP_682179.1| ClpB protein [Thermosynechococcus elongatus BP-... 52 8e-06
gb|AAC62621.1| heat shock protein [Plectonema boryanum] 50 3e-05
gb|AAF91178.1|AF203700_1 ClpB [Phaseolus lunatus] 49 7e-05
>ref|NP_568314.1| HSP100/ClpB, putative; protein id: At5g15450.1 [Arabidopsis
thaliana] gi|11265210|pir||T51523 clpB heat shock
protein-like - Arabidopsis thaliana
gi|9755800|emb|CAC01744.1| clpB heat shock protein-like
[Arabidopsis thaliana]
Length = 968
Score = 62.0 bits (149), Expect = 6e-09
Identities = 33/57 (57%), Positives = 41/57 (71%)
Frame = -2
Query: 490 GLDLETLIQRTRDYKKEYGGSFVSVVHLVLGFTQDQRFGKQLFR*YF*TSQQALKSA 320
G DLE L QR R +KK+ S+VSV HLVL F D+RFGKQLF+ F S+++LKSA
Sbjct: 160 GRDLEALFQRARQFKKDLKDSYVSVEHLVLAFADDKRFGKQLFK-DFQISERSLKSA 215
>gb|ZP_00110302.1| hypothetical protein [Nostoc punctiforme]
Length = 880
Score = 52.0 bits (123), Expect = 6e-06
Identities = 21/44 (47%), Positives = 30/44 (67%)
Frame = -2
Query: 490 GLDLETLIQRTRDYKKEYGGSFVSVVHLVLGFTQDQRFGKQLFR 359
G LE L+ R Y+KE+G ++S+ HL+L F +D RFGK LF+
Sbjct: 87 GHSLERLLDRAEQYRKEFGDEYISIEHLILAFAKDDRFGKGLFQ 130
>ref|NP_682179.1| ClpB protein [Thermosynechococcus elongatus BP-1]
gi|22295113|dbj|BAC08941.1| ClpB protein
[Thermosynechococcus elongatus BP-1]
Length = 871
Score = 51.6 bits (122), Expect = 8e-06
Identities = 21/44 (47%), Positives = 31/44 (69%)
Frame = -2
Query: 490 GLDLETLIQRTRDYKKEYGGSFVSVVHLVLGFTQDQRFGKQLFR 359
G L+ L+ R + +K++G F+S+ HLVL F QD RFGK+LF+
Sbjct: 85 GQSLDKLLDRAEEARKQFGDEFISIEHLVLAFAQDDRFGKKLFQ 128
>gb|AAC62621.1| heat shock protein [Plectonema boryanum]
Length = 883
Score = 49.7 bits (117), Expect = 3e-05
Identities = 24/62 (38%), Positives = 38/62 (60%)
Frame = -2
Query: 505 TSV**GLDLETLIQRTRDYKKEYGGSFVSVVHLVLGFTQDQRFGKQLFR*YF*TSQQALK 326
TSV G + L+ R +Y+K++ SF+S+ HL+LG+ QD RFGK L + + L+
Sbjct: 91 TSVYWGRRADALLXRAEEYRKQFEDSFISIEHLLLGYAQDSRFGKALLSEFRYPDEAKLR 150
Query: 325 SA 320
+A
Sbjct: 151 NA 152
>gb|AAF91178.1|AF203700_1 ClpB [Phaseolus lunatus]
Length = 977
Score = 48.5 bits (114), Expect = 7e-05
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = -2
Query: 490 GLDLETLIQRTRDYKKEYGGSFVSVVHLVLGFTQDQRFGKQLFR 359
G L +L+ R YKKE G +VSV HL+L F D+ FG+QLF+
Sbjct: 172 GSHLSSLLDNARKYKKEMGDEYVSVEHLLLAFHSDKTFGQQLFK 215
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,614,926
Number of Sequences: 1393205
Number of extensions: 10854869
Number of successful extensions: 19109
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 18736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19099
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
