Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010807A_C01 KMC010807A_c01
(449 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_469566.1| similar to alpha-xylosidase and alpha-glucosida... 32 1.3
gb|AAL68150.2| AT30334p [Drosophila melanogaster] 31 3.0
ref|NP_723611.1| CG17118-PA [Drosophila melanogaster] gi|7297748... 31 3.0
ref|NP_463713.1| similar to alpha-xylosidase and alpha-glucosida... 31 3.0
ref|NP_653806.1| DUF224, Domain of unknown function (DUF224) [Ba... 31 3.9
>ref|NP_469566.1| similar to alpha-xylosidase and alpha-glucosidase [Listeria
innocua] gi|25516245|pir||AF1460 alpha-xylosidase and
alpha-glucosidase homolog lin0221 [imported] - Listeria
innocua (strain Clip11262) gi|16412640|emb|CAC95454.1|
similar to alpha-xylosidase and alpha-glucosidase
[Listeria innocua]
Length = 1100
Score = 32.3 bits (72), Expect = 1.3
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +3
Query: 252 KSVQYYNMYIKIKNSYRIGPA*AEFHSLMYFNLLDQELDAKLQHNPDFSPKLPE*QLS*R 431
K++ Y NM +K++++ +G E + F ++ E+ A + H+P + E QL+ R
Sbjct: 206 KALHYLNMAMKMEDNDELGAIFIEINQA--FRAMESEVSAHISHDPFGNENRYEQQLTER 263
Query: 432 GPH 440
PH
Sbjct: 264 TPH 266
>gb|AAL68150.2| AT30334p [Drosophila melanogaster]
Length = 293
Score = 31.2 bits (69), Expect = 3.0
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 92 SDFQN*IYGTNGLQNCKVSLNCIVRVRQYQFHS*EYTESASKEDIKF-----DLRHKEEE 256
+DF YG+N L+ + L+ VR+R+ F YTE+ D + DL+ E++
Sbjct: 149 ADFTRRAYGSNYLETVSLQLHANVRIRRIYFADKLYTEAELPNDYRLMGKPKDLKKPEKQ 208
Query: 257 CTV 265
V
Sbjct: 209 FKV 211
>ref|NP_723611.1| CG17118-PA [Drosophila melanogaster] gi|7297748|gb|AAF52999.1|
CG17118-PA [Drosophila melanogaster]
Length = 281
Score = 31.2 bits (69), Expect = 3.0
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = +2
Query: 92 SDFQN*IYGTNGLQNCKVSLNCIVRVRQYQFHS*EYTESASKEDIKF-----DLRHKEEE 256
+DF YG+N L+ + L+ VR+R+ F YTE+ D + DL+ E++
Sbjct: 137 ADFTRRAYGSNYLETVSLQLHANVRIRRIYFADKLYTEAELPNDYRLMGKPKDLKKPEKQ 196
Query: 257 CTV 265
V
Sbjct: 197 FKV 199
>ref|NP_463713.1| similar to alpha-xylosidase and alpha-glucosidase [Listeria
monocytogenes EGD-e] gi|25516571|pir||AG1097
alpha-xylosidase and alpha-glucosidase homolog lmo0182
[imported] - Listeria monocytogenes (strain EGD-e)
gi|16409539|emb|CAC98397.1| similar to alpha-xylosidase
and alpha-glucosidase [Listeria monocytogenes]
Length = 1100
Score = 31.2 bits (69), Expect = 3.0
Identities = 18/63 (28%), Positives = 33/63 (51%)
Frame = +3
Query: 252 KSVQYYNMYIKIKNSYRIGPA*AEFHSLMYFNLLDQELDAKLQHNPDFSPKLPE*QLS*R 431
K++ Y NM +K++++ +G E + F ++ E+ A + H+P E QL+ R
Sbjct: 206 KALHYLNMAMKMEDNDELGAIFIEINQA--FRAMESEVTAHISHDPFGHENRYEQQLTER 263
Query: 432 GPH 440
PH
Sbjct: 264 TPH 266
>ref|NP_653806.1| DUF224, Domain of unknown function (DUF224) [Bacillus anthracis
A2012]
Length = 703
Score = 30.8 bits (68), Expect = 3.9
Identities = 13/29 (44%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Frame = -1
Query: 320 GLCRTNSVTIFYF--YVHIIILYTLLLYV 240
G+ T ++++FYF +VH++IL T L+YV
Sbjct: 191 GINETAAISVFYFSWWVHLLILLTFLVYV 219
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 329,998,038
Number of Sequences: 1393205
Number of extensions: 5952823
Number of successful extensions: 11445
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11437
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
