Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010806A_C01 KMC010806A_c01
(445 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_236150.1| similar to olfactory receptor MOR224-1 [Mus mus... 33 1.0
gb|AAF99483.1| PV1H14185_P [Plasmodium vivax] 33 1.0
ref|NP_659025.1| polyprotein [Oat mosaic virus] gi|18564814|emb|... 32 1.4
ref|NP_682238.1| ferrous iron transport protein B [Thermosynecho... 32 1.8
gb|EAA15896.1| hypothetical protein [Plasmodium yoelii yoelii] 32 2.3
>ref|XP_236150.1| similar to olfactory receptor MOR224-1 [Mus musculus] [Rattus
norvegicus]
Length = 305
Score = 32.7 bits (73), Expect = 1.0
Identities = 20/56 (35%), Positives = 28/56 (49%), Gaps = 3/56 (5%)
Frame = -3
Query: 233 SFFSCFKNLVYYHFL---EGFLPFSFLVRDEYRGICTGSSLLSLYFPFFCLVLLTL 75
S+ C L +YHFL EG L +S + D Y IC + + P CL L+T+
Sbjct: 91 SYKGCVAQLFFYHFLGSTEGCL-YSVMAYDRYVAICHPLRYMLIMKPGVCLSLVTV 145
>gb|AAF99483.1| PV1H14185_P [Plasmodium vivax]
Length = 846
Score = 32.7 bits (73), Expect = 1.0
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -3
Query: 233 SFFSCFKNLVYYHFLEGFLPFSFLVRDEYRGIC-TGSSLLSLYFPFFCLVLLTLVQRNIY 57
S CF+N+ YY + ++D + GI +G+SLL +FPF + L + I+
Sbjct: 697 SLTKCFENISYYSNKRNIIA----LKDIFIGIVLSGASLLFFFFPFLMINHLNIYSFLIF 752
Query: 56 FLF 48
++F
Sbjct: 753 YIF 755
>ref|NP_659025.1| polyprotein [Oat mosaic virus] gi|18564814|emb|CAC84680.1|
polyprotein [Oat mosaic virus]
Length = 2340
Score = 32.3 bits (72), Expect = 1.4
Identities = 15/47 (31%), Positives = 24/47 (50%)
Frame = +2
Query: 248 ILLIFSQDLRKTMGNCLHIPRPYSKALMNDQLRLLYSADKRAYRIQA 388
+ +F D+ +TMGNCLH + LM+D + + Y +QA
Sbjct: 321 VTYLFDYDIAETMGNCLHKISRLANYLMDDYQGIASKLTQATYGLQA 367
>ref|NP_682238.1| ferrous iron transport protein B [Thermosynechococcus elongatus
BP-1] gi|22295173|dbj|BAC09000.1| ferrous iron transport
protein B [Thermosynechococcus elongatus BP-1]
Length = 596
Score = 32.0 bits (71), Expect = 1.8
Identities = 25/90 (27%), Positives = 39/90 (42%), Gaps = 2/90 (2%)
Frame = -3
Query: 320 WNMALEYGGSYPLFSAGPVKRLTKLYW*ESFFSCFKNLVYYHFLEGFLPF--SFLVRDEY 147
W + L +GG Y +F V L W F F+ V G P S L+ Y
Sbjct: 217 WGLPLFFGGLYLVFQVVWVLGLGLQGWLSDTFEAFQGQVLEPVFAGLPPLLSSLLLEGLY 276
Query: 146 RGICTGSSLLSLYFPFFCLVLLTLVQRNIY 57
GI T ++ + L FF +++ +V+ + Y
Sbjct: 277 GGITTVAAFVPLVTIFF--IVMAIVEDSGY 304
>gb|EAA15896.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1737
Score = 31.6 bits (70), Expect = 2.3
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +3
Query: 9 NHLTGNNTFTDLVEQKVNVPLHKGKENKTKKRKIQGKKRRPCTNTSIFVSYQKRKWEKPL 188
N + N+ ++++++ VN +H +N RK + +KR+ N V+Y K+K +K L
Sbjct: 1133 NSVNKNDNISNILKKSVNGRIHNRSDNDAITRKGK-RKRKKFINV---VNYIKKKTKKKL 1188
Query: 189 *KVVIYKI 212
KV+ K+
Sbjct: 1189 VKVIDKKV 1196
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,776,981
Number of Sequences: 1393205
Number of extensions: 8807417
Number of successful extensions: 27188
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 26167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27114
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 6655800768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
