Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010800A_C01 KMC010800A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC39478.1| respiratory burst oxidase protein E [Arabidopsis ... 157 9e-39
pir||H86325 hypothetical protein T29M8.10 - Arabidopsis thaliana... 157 9e-39
ref|NP_173357.1| respiratory burst oxidase protein, putative; pr... 157 9e-39
pir||T03973 cytochrome b245 beta chain homolog rbohA - rice (fra... 149 7e-36
dbj|BAB68079.1| cytochrome b245 beta chain homolog rbohA [Oryza ... 149 2e-35
>gb|AAC39478.1| respiratory burst oxidase protein E [Arabidopsis thaliana]
Length = 948
Score = 157 bits (396), Expect(2) = 9e-39
Identities = 74/93 (79%), Positives = 83/93 (88%)
Frame = -2
Query: 521 GQIELHNYLTSVYEEGDARSTLITMIQALNHAKHGVDILSGTRVRTHFARPNWREVFIKI 342
GQIELHNYLTSVY+EGDARSTLI M+QALNHAKHGVDILSGTRVRTHFARPNW+EVF I
Sbjct: 844 GQIELHNYLTSVYDEGDARSTLIKMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSSI 903
Query: 341 ASKHPYSTVGVFYCGMPVLAKELKKLSLELSHQ 243
A KHP STVGVFYCG+ +AKELKK + ++S +
Sbjct: 904 ARKHPNSTVGVFYCGIQTVAKELKKQAQDMSQK 936
Score = 24.6 bits (52), Expect(2) = 9e-39
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3
Query: 244 KTTTRFDFHK 215
KTTTRF+FHK
Sbjct: 936 KTTTRFEFHK 945
>pir||H86325 hypothetical protein T29M8.10 - Arabidopsis thaliana
gi|8954060|gb|AAF82233.1|AC069143_9 Contains a strong
similarity to a respiratory burst oxidase protein E
(RbohE) from Arabidopsis thaliana gb|AF055356 and
contains an EF hand PF|00036 and ferric reductase
transmembrane component PF|01794 domains
Length = 932
Score = 157 bits (396), Expect(2) = 9e-39
Identities = 74/93 (79%), Positives = 83/93 (88%)
Frame = -2
Query: 521 GQIELHNYLTSVYEEGDARSTLITMIQALNHAKHGVDILSGTRVRTHFARPNWREVFIKI 342
GQIELHNYLTSVY+EGDARSTLI M+QALNHAKHGVDILSGTRVRTHFARPNW+EVF I
Sbjct: 828 GQIELHNYLTSVYDEGDARSTLIKMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSSI 887
Query: 341 ASKHPYSTVGVFYCGMPVLAKELKKLSLELSHQ 243
A KHP STVGVFYCG+ +AKELKK + ++S +
Sbjct: 888 ARKHPNSTVGVFYCGIQTVAKELKKQAQDMSQK 920
Score = 24.6 bits (52), Expect(2) = 9e-39
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3
Query: 244 KTTTRFDFHK 215
KTTTRF+FHK
Sbjct: 920 KTTTRFEFHK 929
>ref|NP_173357.1| respiratory burst oxidase protein, putative; protein id: At1g19230.1
[Arabidopsis thaliana]
Length = 926
Score = 157 bits (396), Expect(2) = 9e-39
Identities = 74/93 (79%), Positives = 83/93 (88%)
Frame = -2
Query: 521 GQIELHNYLTSVYEEGDARSTLITMIQALNHAKHGVDILSGTRVRTHFARPNWREVFIKI 342
GQIELHNYLTSVY+EGDARSTLI M+QALNHAKHGVDILSGTRVRTHFARPNW+EVF I
Sbjct: 822 GQIELHNYLTSVYDEGDARSTLIKMVQALNHAKHGVDILSGTRVRTHFARPNWKEVFSSI 881
Query: 341 ASKHPYSTVGVFYCGMPVLAKELKKLSLELSHQ 243
A KHP STVGVFYCG+ +AKELKK + ++S +
Sbjct: 882 ARKHPNSTVGVFYCGIQTVAKELKKQAQDMSQK 914
Score = 24.6 bits (52), Expect(2) = 9e-39
Identities = 9/10 (90%), Positives = 10/10 (100%)
Frame = -3
Query: 244 KTTTRFDFHK 215
KTTTRF+FHK
Sbjct: 914 KTTTRFEFHK 923
>pir||T03973 cytochrome b245 beta chain homolog rbohA - rice (fragment)
gi|1235569|emb|CAA63704.1| NAD(P)H oxidase [Oryza sativa
(japonica cultivar-group)]
Length = 590
Score = 149 bits (376), Expect(2) = 7e-36
Identities = 69/89 (77%), Positives = 80/89 (89%)
Frame = -2
Query: 515 IELHNYLTSVYEEGDARSTLITMIQALNHAKHGVDILSGTRVRTHFARPNWREVFIKIAS 336
IE+HNYLTSVYEEGDARS LITM+QALNHAK+GVDI+SGT+VRTHFARPNWR+V KI+S
Sbjct: 488 IEMHNYLTSVYEEGDARSALITMLQALNHAKNGVDIVSGTKVRTHFARPNWRKVLSKISS 547
Query: 335 KHPYSTVGVFYCGMPVLAKELKKLSLELS 249
KHPY+ +GVFYCG PVLA+EL KL E +
Sbjct: 548 KHPYAKIGVFYCGAPVLAQELSKLCHEFN 576
Score = 22.7 bits (47), Expect(2) = 7e-36
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = -3
Query: 244 KTTTRFDFHK 215
K TT+FDFHK
Sbjct: 578 KCTTKFDFHK 587
>dbj|BAB68079.1| cytochrome b245 beta chain homolog rbohA [Oryza sativa (japonica
cultivar-group)] gi|20161009|dbj|BAB89942.1| cytochrome
b245 beta chain homolog rbohA [Oryza sativa (japonica
cultivar-group)]
Length = 943
Score = 149 bits (376), Expect(2) = 2e-35
Identities = 69/89 (77%), Positives = 80/89 (89%)
Frame = -2
Query: 515 IELHNYLTSVYEEGDARSTLITMIQALNHAKHGVDILSGTRVRTHFARPNWREVFIKIAS 336
IE+HNYLTSVYEEGDARS LITM+QALNHAK+GVDI+SGT+VRTHFARPNWR+V KI+S
Sbjct: 841 IEMHNYLTSVYEEGDARSALITMLQALNHAKNGVDIVSGTKVRTHFARPNWRKVLSKISS 900
Query: 335 KHPYSTVGVFYCGMPVLAKELKKLSLELS 249
KHPY+ +GVFYCG PVLA+EL KL E +
Sbjct: 901 KHPYAKIGVFYCGAPVLAQELSKLCHEFN 929
Score = 21.2 bits (43), Expect(2) = 2e-35
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -3
Query: 244 KTTTRFDFHK 215
K TT+F+FHK
Sbjct: 931 KCTTKFEFHK 940
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,361,237
Number of Sequences: 1393205
Number of extensions: 8326328
Number of successful extensions: 17313
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 16837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17277
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
