KMC010796A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC010796A_C01 KMC010796A_c01
GTAATGTGAGTCTCAAATTTATGTGTAAGCTAGTATATCATTTTCTATGAAAAAGTATCT
CTACATCTATGCAGAAATGGCGCTATGGTTGAATCAACATGGAAACAGCAAAAAAGAAGG
TTCAACCTG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010796A_C01 KMC010796A_c01
(129 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_267079.1| UNKNOWN PROTEIN [Lactococcus lactis subsp. lact... 30 7.9
>ref|NP_267079.1| UNKNOWN PROTEIN [Lactococcus lactis subsp. lactis]
gi|25373669|pir||C86740 hypothetical protein yjeG
[imported] - Lactococcus lactis subsp. lactis (strain
IL1403) gi|12723858|gb|AAK05021.1|AE006327_1 UNKNOWN
PROTEIN [Lactococcus lactis subsp. lactis]
Length = 329
Score = 30.4 bits (67), Expect = 7.9
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 8 ESQIYV*ASISFSMKKYLYIYAEMALWLNQHGNSKKEG 121
+S++Y I F K +IY ++NQHGNSKK G
Sbjct: 282 DSRLY---PIHFRNPKLDFIYQSKNNFINQHGNSKKNG 316
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,120,210
Number of Sequences: 1393205
Number of extensions: 969127
Number of successful extensions: 1762
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1762
length of database: 448,689,247
effective HSP length: 18
effective length of database: 423,611,557
effective search space used: 10166677368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MF014h02_f |
BP029003 |
1 |
229 |
2 |
MRL020c08_f |
BP084734 |
121 |
227 |
|
Lotus japonicus
Kazusa DNA Research Institute