KMC010796A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC010796A_C01 KMC010796A_c01
GTAATGTGAGTCTCAAATTTATGTGTAAGCTAGTATATCATTTTCTATGAAAAAGTATCT
CTACATCTATGCAGAAATGGCGCTATGGTTGAATCAACATGGAAACAGCAAAAAAGAAGG
TTCAACCTG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC010796A_C01 KMC010796A_c01
         (129 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_267079.1| UNKNOWN PROTEIN [Lactococcus lactis subsp. lact...    30  7.9

>ref|NP_267079.1| UNKNOWN PROTEIN [Lactococcus lactis subsp. lactis]
           gi|25373669|pir||C86740 hypothetical protein yjeG
           [imported] - Lactococcus lactis subsp. lactis (strain
           IL1403) gi|12723858|gb|AAK05021.1|AE006327_1 UNKNOWN
           PROTEIN [Lactococcus lactis subsp. lactis]
          Length = 329

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 8   ESQIYV*ASISFSMKKYLYIYAEMALWLNQHGNSKKEG 121
           +S++Y    I F   K  +IY     ++NQHGNSKK G
Sbjct: 282 DSRLY---PIHFRNPKLDFIYQSKNNFINQHGNSKKNG 316

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,120,210
Number of Sequences: 1393205
Number of extensions: 969127
Number of successful extensions: 1762
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1762
length of database: 448,689,247
effective HSP length: 18
effective length of database: 423,611,557
effective search space used: 10166677368
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MF014h02_f BP029003 1 229
2 MRL020c08_f BP084734 121 227




Lotus japonicus
Kazusa DNA Research Institute