Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010791A_C01 KMC010791A_c01
(746 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193859.1| kinesin-like protein A (katA); protein id: At4g... 121 9e-27
ref|NP_192428.1| kinesin-like protein A, putative; protein id: A... 120 2e-26
ref|NP_568811.1| kinesin-like protein C (katC); protein id: At5g... 111 1e-23
dbj|BAB09933.1| kinesin-like protein [Arabidopsis thaliana] 111 1e-23
dbj|BAC10376.1| putative kinesin-related protein katA [Oryza sat... 109 4e-23
>ref|NP_193859.1| kinesin-like protein A (katA); protein id: At4g21270.1, supported
by cDNA: gi_303501 [Arabidopsis thaliana]
gi|1170619|sp|Q07970|KATA_ARATH Kinesin-like protein A
gi|479594|pir||S34830 kinesin-related protein katA -
Arabidopsis thaliana gi|303502|dbj|BAA01972.1|
kinesin-like motor protein heavy chain [Arabidopsis
thaliana] gi|2911084|emb|CAA17546.1| kinesin-related
protein katA [Arabidopsis thaliana]
gi|7268924|emb|CAB79127.1| kinesin-related protein katA
[Arabidopsis thaliana]
Length = 793
Score = 121 bits (304), Expect = 9e-27
Identities = 62/71 (87%), Positives = 65/71 (91%)
Frame = -2
Query: 745 RNSKLTYLLQPCLGGDSKTLMFVNISPDQSSVGESLCSLRFASRVNACEIGIPRRQTQTS 566
RNSKLTYLLQPCLGGDSKTLMFVNISPD +S GESLCSLRFA+RVNACEIGIPRR QTS
Sbjct: 725 RNSKLTYLLQPCLGGDSKTLMFVNISPDPTSAGESLCSLRFAARVNACEIGIPRR--QTS 782
Query: 565 TRSLDSRLSSG 533
T+ LDSRLS G
Sbjct: 783 TKLLDSRLSYG 793
>ref|NP_192428.1| kinesin-like protein A, putative; protein id: At4g05190.1
[Arabidopsis thaliana] gi|25295723|pir||C85065
kinesin-like protein [imported] - Arabidopsis thaliana
gi|7267279|emb|CAB81061.1| kinesin-like protein
[Arabidopsis thaliana]
Length = 777
Score = 120 bits (302), Expect = 2e-26
Identities = 62/71 (87%), Positives = 64/71 (89%)
Frame = -2
Query: 745 RNSKLTYLLQPCLGGDSKTLMFVNISPDQSSVGESLCSLRFASRVNACEIGIPRRQTQTS 566
RNSKLTYLLQPCLGGDSKTLMFVNISPD SS GESLCSLRFA+RVNACEIGIPRR QTS
Sbjct: 709 RNSKLTYLLQPCLGGDSKTLMFVNISPDPSSTGESLCSLRFAARVNACEIGIPRR--QTS 766
Query: 565 TRSLDSRLSSG 533
+ LDSRLS G
Sbjct: 767 AKLLDSRLSYG 777
>ref|NP_568811.1| kinesin-like protein C (katC); protein id: At5g54670.1, supported
by cDNA: gi_1438843 [Arabidopsis thaliana]
gi|1170621|sp|P46875|KATC_ARATH Kinesin-like protein C
gi|1084342|pir||S48020 kinesin-related protein katC -
Arabidopsis thaliana gi|1438844|dbj|BAA04674.1| heavy
chain polypeptide of kinesin-like protein [Arabidopsis
thaliana] gi|27808616|gb|AAO24588.1| At5g54670
[Arabidopsis thaliana]
Length = 754
Score = 111 bits (278), Expect = 1e-23
Identities = 55/71 (77%), Positives = 63/71 (88%)
Frame = -2
Query: 745 RNSKLTYLLQPCLGGDSKTLMFVNISPDQSSVGESLCSLRFASRVNACEIGIPRRQTQTS 566
RNSKLTYLLQPCLGGD+KTLMFVNI+P+ SS GESLCSLRFA+RVNACEIG PRR QT+
Sbjct: 686 RNSKLTYLLQPCLGGDAKTLMFVNIAPESSSTGESLCSLRFAARVNACEIGTPRR--QTN 743
Query: 565 TRSLDSRLSSG 533
+ L++RLS G
Sbjct: 744 IKPLENRLSLG 754
>dbj|BAB09933.1| kinesin-like protein [Arabidopsis thaliana]
Length = 746
Score = 111 bits (278), Expect = 1e-23
Identities = 55/71 (77%), Positives = 63/71 (88%)
Frame = -2
Query: 745 RNSKLTYLLQPCLGGDSKTLMFVNISPDQSSVGESLCSLRFASRVNACEIGIPRRQTQTS 566
RNSKLTYLLQPCLGGD+KTLMFVNI+P+ SS GESLCSLRFA+RVNACEIG PRR QT+
Sbjct: 678 RNSKLTYLLQPCLGGDAKTLMFVNIAPESSSTGESLCSLRFAARVNACEIGTPRR--QTN 735
Query: 565 TRSLDSRLSSG 533
+ L++RLS G
Sbjct: 736 IKPLENRLSLG 746
>dbj|BAC10376.1| putative kinesin-related protein katA [Oryza sativa (japonica
cultivar-group)] gi|22324499|dbj|BAC10413.1| putative
kinesin-related protein katA [Oryza sativa (japonica
cultivar-group)]
Length = 733
Score = 109 bits (273), Expect = 4e-23
Identities = 51/58 (87%), Positives = 56/58 (95%)
Frame = -2
Query: 745 RNSKLTYLLQPCLGGDSKTLMFVNISPDQSSVGESLCSLRFASRVNACEIGIPRRQTQ 572
RNSKLTYLLQPCLGGDSKTLMFVN+SP+ SS GES+CSLRFA+RVN+CEIGIPRRQTQ
Sbjct: 669 RNSKLTYLLQPCLGGDSKTLMFVNLSPEVSSTGESICSLRFAARVNSCEIGIPRRQTQ 726
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 592,900,577
Number of Sequences: 1393205
Number of extensions: 12094377
Number of successful extensions: 27359
Number of sequences better than 10.0: 648
Number of HSP's better than 10.0 without gapping: 26426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27341
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36032594816
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
