Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010787A_C01 KMC010787A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF26765.1|AC007396_14 T4O12.25 [Arabidopsis thaliana] 70 2e-11
ref|NP_177732.1| RNA pseudouridylate synthase, putative; protein... 70 2e-11
ref|NP_759476.1| Pseudouridylate synthase, 23S RNA-specific [Vib... 47 2e-04
ref|NP_796938.1| ribosomal large subunit pseudouridine synthase ... 44 0.001
ref|NP_721264.1| putative pseudouridylate synthase [Streptococcu... 44 0.001
>gb|AAF26765.1|AC007396_14 T4O12.25 [Arabidopsis thaliana]
Length = 980
Score = 69.7 bits (169), Expect = 2e-11
Identities = 33/65 (50%), Positives = 44/65 (66%)
Frame = -2
Query: 558 MSLLRLRTPPSLHSGIMKMVSALDRPCLHALTLGFQHPHSGEQVHFSCQPPVDFDEILDQ 379
+SLL+ R S I++++S +DRPCLHA+ LGF HP +GE V FSC PP D EI+
Sbjct: 915 LSLLQKRVSRSDQEEIIELISRMDRPCLHAIVLGFTHPCTGEIVKFSCPPPSDLAEIVGL 974
Query: 378 LRKIG 364
LR+ G
Sbjct: 975 LRRSG 979
>ref|NP_177732.1| RNA pseudouridylate synthase, putative; protein id: At1g76050.1
[Arabidopsis thaliana]
Length = 430
Score = 69.7 bits (169), Expect = 2e-11
Identities = 33/65 (50%), Positives = 44/65 (66%)
Frame = -2
Query: 558 MSLLRLRTPPSLHSGIMKMVSALDRPCLHALTLGFQHPHSGEQVHFSCQPPVDFDEILDQ 379
+SLL+ R S I++++S +DRPCLHA+ LGF HP +GE V FSC PP D EI+
Sbjct: 365 LSLLQKRVSRSDQEEIIELISRMDRPCLHAIVLGFTHPCTGEIVKFSCPPPSDLAEIVGL 424
Query: 378 LRKIG 364
LR+ G
Sbjct: 425 LRRSG 429
>ref|NP_759476.1| Pseudouridylate synthase, 23S RNA-specific [Vibrio vulnificus
CMCP6] gi|27360065|gb|AAO09003.1|AE016798_163
Pseudouridylate synthase, 23S RNA-specific [Vibrio
vulnificus CMCP6]
Length = 325
Score = 46.6 bits (109), Expect = 2e-04
Identities = 22/63 (34%), Positives = 32/63 (49%)
Frame = -2
Query: 546 RLRTPPSLHSGIMKMVSALDRPCLHALTLGFQHPHSGEQVHFSCQPPVDFDEILDQLRKI 367
R R P + M+ DR LHA+ L F+HP +GE++ F P D E+ + LR+
Sbjct: 256 RARIPAGASEDVTAMIRNFDRQALHAVMLRFEHPITGEEMEFHAPVPDDMVELTETLRRD 315
Query: 366 GSE 358
E
Sbjct: 316 AQE 318
>ref|NP_796938.1| ribosomal large subunit pseudouridine synthase D [Vibrio
parahaemolyticus RIMD 2210633]
gi|28805542|dbj|BAC58822.1| ribosomal large subunit
pseudouridine synthase D [Vibrio parahaemolyticus]
Length = 325
Score = 44.3 bits (103), Expect = 0.001
Identities = 21/59 (35%), Positives = 30/59 (50%)
Frame = -2
Query: 546 RLRTPPSLHSGIMKMVSALDRPCLHALTLGFQHPHSGEQVHFSCQPPVDFDEILDQLRK 370
R R P + M+ DR LHA+ L F+HP +GE++ F P D + + LRK
Sbjct: 256 RARIPTGASQELTDMIRGFDRQALHAVMLRFEHPITGEELEFHAPVPDDMVAMTEALRK 314
>ref|NP_721264.1| putative pseudouridylate synthase [Streptococcus mutans UA159]
gi|24377230|gb|AAN58570.1|AE014926_13 putative
pseudouridylate synthase [Streptococcus mutans UA159]
Length = 296
Score = 43.9 bits (102), Expect = 0.001
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = -2
Query: 477 LHALTLGFQHPHSGEQVHFSCQPPVDFDEILDQLRKI 367
LHA TLGF HP +GE + F+ + PV F E+LD L +
Sbjct: 260 LHAKTLGFTHPKTGELMQFTTEVPVIFQEVLDHLHHL 296
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,656,165
Number of Sequences: 1393205
Number of extensions: 9921695
Number of successful extensions: 21699
Number of sequences better than 10.0: 115
Number of HSP's better than 10.0 without gapping: 21202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21694
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
