Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010785A_C01 KMC010785A_c01
(573 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191796.1| putative protein; protein id: At3g62370.1, supp... 132 3e-30
gb|EAA18372.1| hypothetical protein [Plasmodium yoelii yoelii] 34 1.1
gb|ZP_00078730.1| hypothetical protein [Methanosarcina barkeri] 32 4.3
gb|ZP_00036984.1| hypothetical protein [Enterococcus faecium] 32 4.3
dbj|BAB09897.1| contains similarity to protein kinase~gene_id:MI... 32 5.7
>ref|NP_191796.1| putative protein; protein id: At3g62370.1, supported by cDNA:
gi_19423875 [Arabidopsis thaliana]
gi|11281207|pir||T48029 hypothetical protein T12C14.70 -
Arabidopsis thaliana gi|7340708|emb|CAB82951.1| putative
protein [Arabidopsis thaliana]
gi|19423876|gb|AAL87316.1| unknown protein [Arabidopsis
thaliana] gi|22136956|gb|AAM91707.1| unknown protein
[Arabidopsis thaliana]
Length = 361
Score = 132 bits (332), Expect = 3e-30
Identities = 62/101 (61%), Positives = 79/101 (77%)
Frame = -3
Query: 424 QDVQFTIGGSSKMSVAFWYPEDGKPWHGSGHYSVNCDWVPIDISQGSSLSGKLAGTAGSS 245
QDVQFT+G +KMSVAFWYP D KPWHGSGHY++NCDW P+DIS GSS SG A T S
Sbjct: 262 QDVQFTLGSPAKMSVAFWYPVDSKPWHGSGHYTINCDWTPLDISSGSS-SGLTASTVKGS 320
Query: 244 SSWNFASAFSLILSVAALCVSVFVSYRIFSPKSVPFTPMED 122
S + AS +++LS+ +L S F++YR+FSP++VPFTPME+
Sbjct: 321 S--DGASITAILLSMISLVFSGFIAYRLFSPRNVPFTPMEN 359
>gb|EAA18372.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1487
Score = 34.3 bits (77), Expect = 1.1
Identities = 14/43 (32%), Positives = 23/43 (52%)
Frame = +3
Query: 435 FCNTLLAFYCINEIQENRYNYCTVKTCLVSTFKVSESYEMNIC 563
+C+ L A+Y + Q ++YNYCT L + S + +IC
Sbjct: 333 YCDELTAYYENTKYQNSKYNYCTYCASLYDAYNNLSSCDSDIC 375
>gb|ZP_00078730.1| hypothetical protein [Methanosarcina barkeri]
Length = 387
Score = 32.3 bits (72), Expect = 4.3
Identities = 18/49 (36%), Positives = 28/49 (56%), Gaps = 2/49 (4%)
Frame = -3
Query: 328 SVNCDWVPIDISQGSSLSGKLAG--TAGSSSSWNFASAFSLILSVAALC 188
+VN PI+I+ G+ + + G T+G+ SS N FSL+ +A LC
Sbjct: 331 TVNVGKYPIEIAFGNFVDSNMTGQSTSGNESSKNSTPGFSLLGGLACLC 379
>gb|ZP_00036984.1| hypothetical protein [Enterococcus faecium]
Length = 229
Score = 32.3 bits (72), Expect = 4.3
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = -3
Query: 259 TAGSSSSWNFASAFSLILSVAALCVSVFV 173
T G+S ++ ASA +LI+SV +CVS+ V
Sbjct: 190 TTGTSPQYSMASAITLIISVIVICVSLLV 218
>dbj|BAB09897.1| contains similarity to protein kinase~gene_id:MIK19.26 [Arabidopsis
thaliana]
Length = 710
Score = 32.0 bits (71), Expect = 5.7
Identities = 17/55 (30%), Positives = 29/55 (51%)
Frame = +3
Query: 372 QNATDILLDPPMVNCTSCKV*FCNTLLAFYCINEIQENRYNYCTVKTCLVSTFKV 536
+ A + LLDP ++NC + +C L A+ CI +R V + L +T+K+
Sbjct: 601 KQAINELLDPRLMNCYCEQEVYCMALCAYLCIRRDPNSRPRMSQVCSHLKNTYKL 655
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,427,655
Number of Sequences: 1393205
Number of extensions: 10481834
Number of successful extensions: 28218
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 27222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28199
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
