Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010777A_C01 KMC010777A_c01
(625 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9SC88|GCP4_MEDTR Gamma-tubulin complex component 4 homolog g... 89 4e-17
ref|NP_190944.1| putative protein; protein id: At3g53760.1 [Arab... 85 7e-16
ref|NP_650731.1| CG14304-PA [Drosophila melanogaster] gi|7300412... 32 6.7
>sp|Q9SC88|GCP4_MEDTR Gamma-tubulin complex component 4 homolog
gi|6562700|emb|CAB62542.1| 85p protein [Medicago
truncatula]
Length = 739
Score = 89.4 bits (220), Expect = 4e-17
Identities = 44/52 (84%), Positives = 48/52 (91%)
Frame = -1
Query: 625 ILRSSRLAGSQRAPFLRRFLLRLNLNSFFEATARGVLNVVRPRPTLPVLNQQ 470
ILRSSRLAGSQR PFLRRFLLRLNLNSFFE+TA+ V+NVVRPRPT P LNQ+
Sbjct: 688 ILRSSRLAGSQRTPFLRRFLLRLNLNSFFESTAKEVMNVVRPRPTFPGLNQR 739
>ref|NP_190944.1| putative protein; protein id: At3g53760.1 [Arabidopsis thaliana]
gi|22095728|sp|Q9M350|GCP4_ARATH Gamma-tubulin complex
component 4 homolog gi|11285615|pir||T45916 hypothetical
protein F5K20.60 - Arabidopsis thaliana
gi|7629996|emb|CAB88338.1| putative protein [Arabidopsis
thaliana]
Length = 738
Score = 85.1 bits (209), Expect = 7e-16
Identities = 42/48 (87%), Positives = 45/48 (93%)
Frame = -1
Query: 625 ILRSSRLAGSQRAPFLRRFLLRLNLNSFFEATARGVLNVVRPRPTLPV 482
ILRSS+LAGSQRAPFLRRFLLRLN NSF+EATARGVLNVVR RP LP+
Sbjct: 691 ILRSSKLAGSQRAPFLRRFLLRLNFNSFYEATARGVLNVVRQRPALPL 738
>ref|NP_650731.1| CG14304-PA [Drosophila melanogaster] gi|7300412|gb|AAF55570.1|
CG14304-PA [Drosophila melanogaster]
Length = 1194
Score = 32.0 bits (71), Expect = 6.7
Identities = 22/77 (28%), Positives = 34/77 (43%), Gaps = 1/77 (1%)
Frame = +2
Query: 29 PLNKTFKLGHISISCISRNFPSITYNIIDINKQLHYT-HHHSMLTSTKGKKVGKSHPKHK 205
PLN T K + I+R P+I I++ H T H L + ++V + HP+
Sbjct: 174 PLNPTHKANCFLLKSINREIPAI-LRILEYETSRHKTVQHFPPLPPSPKEQVQQQHPQQH 232
Query: 206 HDTFKTEQFIQ*NQ*EP 256
H +Q Q Q +P
Sbjct: 233 HHLLHHQQQQQQQQQQP 249
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,143,973
Number of Sequences: 1393205
Number of extensions: 10911284
Number of successful extensions: 32722
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32702
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
