Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010761A_C01 KMC010761A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H86201 hypothetical protein [imported] - Arabidopsis thalia... 105 5e-22
gb|AAK68797.1| Unknown protein [Arabidopsis thaliana] gi|2014844... 105 5e-22
ref|NP_172157.1| unknown protein; protein id: At1g06720.1 [Arabi... 105 5e-22
ref|NP_055568.1| KIAA0187 gene product [Homo sapiens] gi|2715147... 60 3e-08
gb|AAH43345.1| KIAA0187 gene product [Homo sapiens] 60 3e-08
>pir||H86201 hypothetical protein [imported] - Arabidopsis thaliana
gi|7523707|gb|AAF63146.1|AC011001_16 Putative membrane
protein [Arabidopsis thaliana]
Length = 1138
Score = 105 bits (262), Expect = 5e-22
Identities = 50/90 (55%), Positives = 67/90 (73%)
Frame = -2
Query: 603 PKRNQPLLEQRRQKGVVMEPRERKVLALVQHIQLINHDKMKKRKLKENEKRKAHEAEKAK 424
PKR +P LE +R V+MEP+ERK ++Q QL+ H MKK+K + +KRK +EAEKAK
Sbjct: 1049 PKRKRPSLEDKR--AVIMEPKERKEHTIIQQFQLLQHHTMKKKKATDQKKRKEYEAEKAK 1106
Query: 423 EEQLSKKRRREERREKYRTQDKSSKKMRRS 334
E+++KKRRREERR++YR +DK KK RRS
Sbjct: 1107 NEEINKKRRREERRDRYREEDKQKKKTRRS 1136
>gb|AAK68797.1| Unknown protein [Arabidopsis thaliana] gi|20148443|gb|AAM10112.1|
unknown protein [Arabidopsis thaliana]
Length = 381
Score = 105 bits (262), Expect = 5e-22
Identities = 50/90 (55%), Positives = 67/90 (73%)
Frame = -2
Query: 603 PKRNQPLLEQRRQKGVVMEPRERKVLALVQHIQLINHDKMKKRKLKENEKRKAHEAEKAK 424
PKR +P LE +R V+MEP+ERK ++Q QL+ H MKK+K + +KRK +EAEKAK
Sbjct: 292 PKRKRPSLEDKR--AVIMEPKERKEHTIIQQFQLLQHHTMKKKKATDQKKRKEYEAEKAK 349
Query: 423 EEQLSKKRRREERREKYRTQDKSSKKMRRS 334
E+++KKRRREERR++YR +DK KK RRS
Sbjct: 350 NEEINKKRRREERRDRYREEDKQKKKTRRS 379
>ref|NP_172157.1| unknown protein; protein id: At1g06720.1 [Arabidopsis thaliana]
Length = 1147
Score = 105 bits (262), Expect = 5e-22
Identities = 50/90 (55%), Positives = 67/90 (73%)
Frame = -2
Query: 603 PKRNQPLLEQRRQKGVVMEPRERKVLALVQHIQLINHDKMKKRKLKENEKRKAHEAEKAK 424
PKR +P LE +R V+MEP+ERK ++Q QL+ H MKK+K + +KRK +EAEKAK
Sbjct: 1058 PKRKRPSLEDKR--AVIMEPKERKEHTIIQQFQLLQHHTMKKKKATDQKKRKEYEAEKAK 1115
Query: 423 EEQLSKKRRREERREKYRTQDKSSKKMRRS 334
E+++KKRRREERR++YR +DK KK RRS
Sbjct: 1116 NEEINKKRRREERRDRYREEDKQKKKTRRS 1145
>ref|NP_055568.1| KIAA0187 gene product [Homo sapiens] gi|27151474|sp|Q14692|BMS1_HUMAN
Ribosome biogenesis protein BMS1 homolog
gi|1136434|dbj|BAA11504.1| KIAA0187 [Homo sapiens]
Length = 1282
Score = 59.7 bits (143), Expect = 3e-08
Identities = 28/82 (34%), Positives = 50/82 (60%)
Frame = -2
Query: 579 EQRRQKGVVMEPRERKVLALVQHIQLINHDKMKKRKLKENEKRKAHEAEKAKEEQLSKKR 400
+ RR+ V+ EP ERK+LAL+ + ++ KMKK K + + K H K KEE+ KR
Sbjct: 1191 KDRRRPAVIREPHERKILALLDALSTVHSQKMKKAKEQRHLHNKEHFRAKQKEEEEKLKR 1250
Query: 399 RREERREKYRTQDKSSKKMRRS 334
+++ R++ +R Q + ++ ++S
Sbjct: 1251 QKDLRKKLFRIQGQKERRNQKS 1272
>gb|AAH43345.1| KIAA0187 gene product [Homo sapiens]
Length = 1282
Score = 59.7 bits (143), Expect = 3e-08
Identities = 28/82 (34%), Positives = 50/82 (60%)
Frame = -2
Query: 579 EQRRQKGVVMEPRERKVLALVQHIQLINHDKMKKRKLKENEKRKAHEAEKAKEEQLSKKR 400
+ RR+ V+ EP ERK+LAL+ + ++ KMKK K + + K H K KEE+ KR
Sbjct: 1191 KDRRRPAVIREPHERKILALLDALSTVHSQKMKKAKEQRHLHNKEHFRAKQKEEEEKLKR 1250
Query: 399 RREERREKYRTQDKSSKKMRRS 334
+++ R++ +R Q + ++ ++S
Sbjct: 1251 QKDLRKKLFRIQGQKERRNQKS 1272
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,295,924
Number of Sequences: 1393205
Number of extensions: 8692996
Number of successful extensions: 63580
Number of sequences better than 10.0: 1643
Number of HSP's better than 10.0 without gapping: 42258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56935
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
