Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010757A_C01 KMC010757A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566802.1| expressed protein; protein id: At3g26850.1, sup... 42 0.003
gb|AAO72717.1| unknown protein [Arabidopsis thaliana] 40 0.011
ref|NP_671921.1| hypothetical protein; protein id: At2g33835.1 [... 40 0.011
gb|EAA41607.1| GLP_291_11778_8566 [Giardia lamblia ATCC 50803] 31 8.6
>ref|NP_566802.1| expressed protein; protein id: At3g26850.1, supported by cDNA:
gi_15810130 [Arabidopsis thaliana]
gi|9279675|dbj|BAB01232.1| gene_id:MDJ14.17~unknown
protein [Arabidopsis thaliana]
gi|15810131|gb|AAL07209.1| unknown protein [Arabidopsis
thaliana]
Length = 265
Score = 42.4 bits (98), Expect = 0.003
Identities = 21/45 (46%), Positives = 29/45 (63%)
Frame = -2
Query: 488 VDKVISTLEPHQIPTSVDTAKNYVTSCRGKIAKLVMGYVTKYGKS 354
VDKV +++E +IP S Y+ S + K+ KLVMGYV KY K+
Sbjct: 221 VDKVSNSMEGRRIPKSRAKIDKYIDSSQQKLTKLVMGYVDKYVKA 265
>gb|AAO72717.1| unknown protein [Arabidopsis thaliana]
Length = 381
Score = 40.4 bits (93), Expect = 0.011
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = -2
Query: 494 KSVDKVI-STLEPHQIPTSVDTAKNYVTSCRGKIAKLVMGYVTKYGK 357
K+ +KV+ + ++ HQ+PT ++ Y+ +I KLV GYV KYGK
Sbjct: 334 KAAEKVVGAAVQFHQVPTDTESVDQYLGLSGTRIVKLVEGYVEKYGK 380
>ref|NP_671921.1| hypothetical protein; protein id: At2g33835.1 [Arabidopsis
thaliana]
Length = 587
Score = 40.4 bits (93), Expect = 0.011
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = -2
Query: 494 KSVDKVI-STLEPHQIPTSVDTAKNYVTSCRGKIAKLVMGYVTKYGK 357
K+ +KV+ + ++ HQ+PT ++ Y+ +I KLV GYV KYGK
Sbjct: 540 KAAEKVVGAAVQFHQVPTDTESVDQYLGLSGTRIVKLVEGYVEKYGK 586
>gb|EAA41607.1| GLP_291_11778_8566 [Giardia lamblia ATCC 50803]
Length = 1070
Score = 30.8 bits (68), Expect = 8.6
Identities = 25/94 (26%), Positives = 47/94 (49%), Gaps = 5/94 (5%)
Frame = +3
Query: 219 LEITFKTFQINLDYEMDSLRRSFHEIGSAKLIRNCTKKGAWARIS*FAIFS-----DISH 383
L++ + N+D E+ SLR ++ E +C ++ + IS ++F+ D +
Sbjct: 687 LQLIIDEVEANVDVELSSLRTTYME--------DCIQEFSVV-ISPISVFTVMKGYDTIN 737
Query: 384 DQLCNFPPT*SHIVLSSIYGGRNLVRLQGTNDLV 485
LC+ PPT IVL+++ VR + T+D +
Sbjct: 738 SHLCSIPPTTKQIVLTAV------VRDERTSDSI 765
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,711,723
Number of Sequences: 1393205
Number of extensions: 8208693
Number of successful extensions: 14629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14622
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
