Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010748A_C01 KMC010748A_c01
(437 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA40474.1| chitinase [Phaseolus vulgaris] 32 1.8
sp|P27054|CHI4_PHAVU Endochitinase PR4 precursor gi|100000|pir||... 32 1.8
dbj|BAB14011.1| unnamed protein product [Homo sapiens] 31 3.1
dbj|BAC31850.1| unnamed protein product [Mus musculus] 31 3.1
pir||T00076 hypothetical protein KIAA0462 - human (fragment) gi|... 31 3.1
>emb|CAA40474.1| chitinase [Phaseolus vulgaris]
Length = 271
Score = 32.0 bits (71), Expect = 1.8
Identities = 17/51 (33%), Positives = 25/51 (48%)
Frame = -2
Query: 307 VGTALVEVLLKLSLR*RS*LNYLGAYNILCCFAGCFEGFCCTAVGFIGNDE 155
+G LV VL+ ++L +G N+ GC EG CC+ G+ G E
Sbjct: 1 MGNKLVLVLVAVAL-------VMGPKNVSAQNCGCAEGLCCSQYGYCGTGE 44
>sp|P27054|CHI4_PHAVU Endochitinase PR4 precursor gi|100000|pir||S16579 chitinase (EC
3.2.1.14) precursor - kidney bean
Length = 270
Score = 32.0 bits (71), Expect = 1.8
Identities = 17/51 (33%), Positives = 25/51 (48%)
Frame = -2
Query: 307 VGTALVEVLLKLSLR*RS*LNYLGAYNILCCFAGCFEGFCCTAVGFIGNDE 155
+G LV VL+ ++L +G N+ GC EG CC+ G+ G E
Sbjct: 1 MGNKLVLVLVAVAL-------VMGPKNVSAQNCGCAEGLCCSQYGYCGTGE 44
>dbj|BAB14011.1| unnamed protein product [Homo sapiens]
Length = 212
Score = 31.2 bits (69), Expect = 3.1
Identities = 22/78 (28%), Positives = 36/78 (45%)
Frame = +2
Query: 65 KS*KLKYSIQRRQQKSILSLAFTYSPLFLEFIITNEPYSSTTKTFKAPRKTAKYIIGPQV 244
K+ K++ + + + K L L S L +EF E Y ++T+T + PR +A P V
Sbjct: 29 KAKKVQLTPGQTEVKIDLPLPIVASNLMIEFADFYENYQASTETLQCPRCSASVPANPGV 88
Query: 245 IQSASLPETQFEQNFYQC 298
+ +N YQC
Sbjct: 89 CGNCG-------ENVYQC 99
>dbj|BAC31850.1| unnamed protein product [Mus musculus]
Length = 1302
Score = 31.2 bits (69), Expect = 3.1
Identities = 22/78 (28%), Positives = 36/78 (45%)
Frame = +2
Query: 65 KS*KLKYSIQRRQQKSILSLAFTYSPLFLEFIITNEPYSSTTKTFKAPRKTAKYIIGPQV 244
K+ K++ + + + K L L S L +EF E Y ++T+T + PR +A P V
Sbjct: 452 KAKKVQLTPGQTEVKIDLPLPIVASNLMIEFADFYENYQASTETLQCPRCSASVPANPGV 511
Query: 245 IQSASLPETQFEQNFYQC 298
+ +N YQC
Sbjct: 512 CGNCG-------ENVYQC 522
>pir||T00076 hypothetical protein KIAA0462 - human (fragment)
gi|3413886|dbj|BAA32307.1| KIAA0462 protein [Homo
sapiens]
Length = 2276
Score = 31.2 bits (69), Expect = 3.1
Identities = 22/78 (28%), Positives = 36/78 (45%)
Frame = +2
Query: 65 KS*KLKYSIQRRQQKSILSLAFTYSPLFLEFIITNEPYSSTTKTFKAPRKTAKYIIGPQV 244
K+ K++ + + + K L L S L +EF E Y ++T+T + PR +A P V
Sbjct: 707 KAKKVQLTPGQTEVKIDLPLPIVASNLMIEFADFYENYQASTETLQCPRCSASVPANPGV 766
Query: 245 IQSASLPETQFEQNFYQC 298
+ +N YQC
Sbjct: 767 CGNCG-------ENVYQC 777
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,517,325
Number of Sequences: 1393205
Number of extensions: 7564413
Number of successful extensions: 17358
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 16913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17354
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
