Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010746A_C01 KMC010746A_c01
(459 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_442481.1| general secretion pathway protein E [Synechocys... 34 0.63
ref|NP_757994.1| arginine deiminase [Mycoplasma penetrans] gi|26... 31 6.9
ref|NP_711122.1| conserved hypothetical protein [Leptospira inte... 31 6.9
ref|NP_009637.1| Transcription factor; Spt7p [Saccharomyces cere... 31 6.9
>ref|NP_442481.1| general secretion pathway protein E [Synechocystis sp. PCC 6803]
gi|7469656|pir||S76607 hypothetical protein -
Synechocystis sp. (strain PCC 6803)
gi|1001714|dbj|BAA10551.1| general secretion pathway
protein E [Synechocystis sp. PCC 6803]
Length = 813
Score = 34.3 bits (77), Expect = 0.63
Identities = 16/56 (28%), Positives = 31/56 (54%)
Frame = -2
Query: 347 VT*SAQPNPPMYPSSVGWINKIMMQGLAELTVSELICQQSVRAGFSGLVGIFEILS 180
VT Q + P ++ N + M+ +A+ + +C+Q G+SG+ GIFE+++
Sbjct: 529 VTPEEQQRFGLPPGTIYRANSLSMELMAQPMIKSRLCRQCHGLGYSGMTGIFEVVA 584
>ref|NP_757994.1| arginine deiminase [Mycoplasma penetrans]
gi|26454068|dbj|BAC44398.1| arginine deiminase
[Mycoplasma penetrans]
Length = 452
Score = 30.8 bits (68), Expect = 6.9
Identities = 19/78 (24%), Positives = 31/78 (39%)
Frame = -2
Query: 377 KDVIICHYTLVT*SAQPNPPMYPSSVGWINKIMMQGLAELTVSELICQQSVRAGFSGLVG 198
++VI + N P Y VG I + L+ S R F+ +
Sbjct: 225 REVIFSRFVFTNNPKYKNTPRYFDIVGNNGTIEGGDIFIYNSKTLVIGNSERTNFAAIES 284
Query: 197 IFEILSAPKDCTFKRYFI 144
+ + + A KDCTF+R +
Sbjct: 285 VAKNIQANKDCTFERIVV 302
>ref|NP_711122.1| conserved hypothetical protein [Leptospira interrogans serovar lai
str. 56601] gi|24194443|gb|AAN48140.1|AE011278_1
conserved hypothetical protein [Leptospira interrogans
serovar lai str. 56601]
Length = 162
Score = 30.8 bits (68), Expect = 6.9
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +1
Query: 52 MLSCYQVHRKQSSETGKAKNMRKLKTLTPNDIKYRLKVQSFGAERISKMP 201
+L C QV RK E L+ ++P D+ Y LKV S GAER +P
Sbjct: 52 LLECEQVSRKLKEE---------LERISP-DLDYTLKVSSAGAERKLNLP 91
>ref|NP_009637.1| Transcription factor; Spt7p [Saccharomyces cerevisiae]
gi|464802|sp|P35177|SPT7_YEAST TRANSCRIPTIONAL ACTIVATOR
SPT7 gi|542365|pir||S41552 probable transcription factor
SPT7 - yeast (Saccharomyces cerevisiae)
gi|349190|gb|AAC37424.1| transcription factor
gi|536342|emb|CAA85026.1| ORF YBR081c [Saccharomyces
cerevisiae] gi|558360|emb|CAA53940.1| ORF
YBRO739~homologous to bromodomain Spt7 of S.cerevisiae
[Saccharomyces cerevisiae]
Length = 1332
Score = 30.8 bits (68), Expect = 6.9
Identities = 20/99 (20%), Positives = 40/99 (40%)
Frame = +1
Query: 7 NKNFKLLQSVGNILHMLSCYQVHRKQSSETGKAKNMRKLKTLTPNDIKYRLKVQSFGAER 186
N+N L+Q + +I H +S ++ + S N L + Y + S +
Sbjct: 906 NQNITLIQQIRHICHKISLIRMLQSPLSAQNSRSNPNAF--LNNHIYNYTIIDDSLDIDP 963
Query: 187 ISKMPTNPENPARTLCWQISSLTVNSASPCIMILFIHPT 303
+S++PT+ R L W+ ++ + HP+
Sbjct: 964 VSQLPTHDYKNNRELIWKFMHKNISKVAMANGFETAHPS 1002
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,628,754
Number of Sequences: 1393205
Number of extensions: 8672099
Number of successful extensions: 20897
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20893
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
