Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010735A_C01 KMC010735A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_701808.1| hypothetical protein [Plasmodium falciparum 3D7... 33 1.4
gb|EAA15638.1| hypothetical protein [Plasmodium yoelii yoelii] 32 4.2
ref|NP_473079.2| hypothetical protein [Plasmodium falciparum 3D7... 32 4.2
pir||H71606 hypothetical protein PFB0755w - malaria parasite (Pl... 32 4.2
>ref|NP_701808.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496981|gb|AAN36532.1|AE014851_51 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 440
Score = 33.5 bits (75), Expect = 1.4
Identities = 26/90 (28%), Positives = 41/90 (44%), Gaps = 7/90 (7%)
Frame = +1
Query: 160 NNLHLYTKRHAELYKTLLFIQHSQPIQKDYGCPIKSTCIASCVLNYLIICIHIQKDMQSY 339
NN + ++ K LL+ ++P+ ++ C S + LNY+ CI D+ Y
Sbjct: 288 NNNIIGGTNSSDSLKNLLY-SLNKPLMQEMMCSKGSMEVP---LNYMYFCISKNTDIYDY 343
Query: 340 IR-------LLYSPNKVSLYKKTTGNLHFI 408
I+ LLYS K ++Y TGN I
Sbjct: 344 IKNKNKDISLLYSDEKKNVYATLTGNASII 373
>gb|EAA15638.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 376
Score = 32.0 bits (71), Expect = 4.2
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Frame = +1
Query: 289 LNYLIICIHIQKDMQSYIR-------LLYSPNKVSLYKKTTGNLHFI 408
LNYL CI D+ ++++ +LYS +K ++Y TGN I
Sbjct: 263 LNYLYFCISKNSDIHNFLKNNNNNISILYSDDKKNIYATLTGNATII 309
>ref|NP_473079.2| hypothetical protein [Plasmodium falciparum 3D7]
gi|23503418|gb|AAC71940.2| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1643
Score = 32.0 bits (71), Expect = 4.2
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Frame = +1
Query: 145 RSDLLNNLHLYTKRHAELYKTLLFIQHSQPI---QKDYGCPI-KSTCIA------SCVLN 294
+ DL+N +H+ +K+H + + +I+ +P+ K Y + K+ I C+ N
Sbjct: 312 QKDLMNMIHIKSKKHQLINFSSYYIKFIKPLFNKNKYYNKSLYKNMKIVVDINENVCIYN 371
Query: 295 YLIICIHIQKDMQSYIRLLYSPNKVSLY 378
I ++I KD Y RL Y K SL+
Sbjct: 372 DHYIFVYIIKDYNIYERLKYKNFKCSLF 399
>pir||H71606 hypothetical protein PFB0755w - malaria parasite (Plasmodium
falciparum)
Length = 1398
Score = 32.0 bits (71), Expect = 4.2
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Frame = +1
Query: 145 RSDLLNNLHLYTKRHAELYKTLLFIQHSQPI---QKDYGCPI-KSTCIA------SCVLN 294
+ DL+N +H+ +K+H + + +I+ +P+ K Y + K+ I C+ N
Sbjct: 67 QKDLMNMIHIKSKKHQLINFSSYYIKFIKPLFNKNKYYNKSLYKNMKIVVDINENVCIYN 126
Query: 295 YLIICIHIQKDMQSYIRLLYSPNKVSLY 378
I ++I KD Y RL Y K SL+
Sbjct: 127 DHYIFVYIIKDYNIYERLKYKNFKCSLF 154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 369,682,927
Number of Sequences: 1393205
Number of extensions: 6980098
Number of successful extensions: 16614
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16607
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
