Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010730A_C01 KMC010730A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T18535 high molecular mass nuclear antigen - chicken (fragm... 36 0.26
gb|EAA30604.1| hypothetical protein [Neurospora crassa] 35 0.45
ref|XP_209582.1| hypothetical protein XP_209582 [Homo sapiens] 35 0.59
dbj|BAC03887.1| unnamed protein product [Homo sapiens] 35 0.59
dbj|BAC65530.1| mKIAA0324 protein [Mus musculus] 35 0.77
>pir||T18535 high molecular mass nuclear antigen - chicken (fragment)
gi|2754696|dbj|BAA24137.1| high molecular mass nuclear
antigen [Gallus gallus]
Length = 1151
Score = 36.2 bits (82), Expect = 0.26
Identities = 25/57 (43%), Positives = 35/57 (60%)
Frame = -1
Query: 530 VPAGSEPHKPKRSEASSYSSSSVTPAQLLFLQSSSHSSSLAYSSSSATAAVAGYHSP 360
VPA + P K KRS +SS SSSS + + SSS SSS + S SS++++ + SP
Sbjct: 1025 VPAEAAPTKAKRSSSSSSSSSSSSSS-----SSSSSSSSSSDSDSSSSSSESNPASP 1076
>gb|EAA30604.1| hypothetical protein [Neurospora crassa]
Length = 692
Score = 35.4 bits (80), Expect = 0.45
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = -1
Query: 536 HDVPAGSEPH-KPKRSEASSYSSSSVTPAQLLFLQSSSHSSSLAYSSSSATAAVAGYHSP 360
H VP G+ P S +SS SSSS + + SSS SSS + SSSS++++ G++S
Sbjct: 484 HWVPEGTTSVVAPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNTGFNSH 543
Query: 359 RNQS 348
N +
Sbjct: 544 VNSN 547
>ref|XP_209582.1| hypothetical protein XP_209582 [Homo sapiens]
Length = 252
Score = 35.0 bits (79), Expect = 0.59
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = -1
Query: 524 AGSEPHKPKRSEASSYSSSSVTPAQLLFLQSSSHSSSLAYSSSSATAAVAGYHSPRNQS 348
+ S P S +SS SSSS +P+ SSS SSS + SSS++++ + SP + S
Sbjct: 113 SSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSPSSSS 171
Score = 31.6 bits (70), Expect = 6.5
Identities = 19/48 (39%), Positives = 28/48 (57%)
Frame = -1
Query: 527 PAGSEPHKPKRSEASSYSSSSVTPAQLLFLQSSSHSSSLAYSSSSATA 384
P+ S P S + S SSS+ +P+ SSS SSS + SSSS+++
Sbjct: 69 PSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSS 116
Score = 31.2 bits (69), Expect = 8.5
Identities = 21/59 (35%), Positives = 32/59 (53%)
Frame = -1
Query: 524 AGSEPHKPKRSEASSYSSSSVTPAQLLFLQSSSHSSSLAYSSSSATAAVAGYHSPRNQS 348
+ S P S +SS SSSS +P+ SSS SSS + SSS ++++ + S + S
Sbjct: 124 SSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSS 182
>dbj|BAC03887.1| unnamed protein product [Homo sapiens]
Length = 258
Score = 35.0 bits (79), Expect = 0.59
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = -1
Query: 524 AGSEPHKPKRSEASSYSSSSVTPAQLLFLQSSSHSSSLAYSSSSATAAVAGYHSPRNQS 348
+ S P S +SS SSSS +P+ SSS SSS + SSS++++ + SP + S
Sbjct: 114 SSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSPSSSS 172
Score = 31.2 bits (69), Expect = 8.5
Identities = 21/59 (35%), Positives = 32/59 (53%)
Frame = -1
Query: 524 AGSEPHKPKRSEASSYSSSSVTPAQLLFLQSSSHSSSLAYSSSSATAAVAGYHSPRNQS 348
+ S P S +SS SSSS +P+ SSS SSS + SSS ++++ + S + S
Sbjct: 125 SSSSPSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSS 183
>dbj|BAC65530.1| mKIAA0324 protein [Mus musculus]
Length = 1754
Score = 34.7 bits (78), Expect = 0.77
Identities = 23/54 (42%), Positives = 31/54 (56%)
Frame = -1
Query: 542 IRHDVPAGSEPHKPKRSEASSYSSSSVTPAQLLFLQSSSHSSSLAYSSSSATAA 381
IR P P K KR +SS SSSS + + SSS SSS + SSSS++++
Sbjct: 1595 IREGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 1648
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,594,061
Number of Sequences: 1393205
Number of extensions: 8607237
Number of successful extensions: 32170
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 21674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27107
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
