Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010728A_C01 KMC010728A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL17711.1| acetone carboxylase alpha subunit [Xanthobacter s... 35 0.52
ref|NP_194537.1| putative protein; protein id: At4g28080.1 [Arab... 35 0.52
ref|ZP_00089867.1| hypothetical protein [Azotobacter vinelandii] 32 5.7
ref|NP_510851.1| Predicted CDS, putative N-myristoylated nuclear... 32 5.7
>gb|AAL17711.1| acetone carboxylase alpha subunit [Xanthobacter sp. Py2]
Length = 776
Score = 35.4 bits (80), Expect = 0.52
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -1
Query: 409 KYCQGCAYQGNRMRYSGFDWTEFFYLNFHVRTDY 308
KY GC ++ RM ++ DWT FF N H+ +D+
Sbjct: 513 KYRGGCGFESLRMVWNAKDWTMFFMGNGHISSDW 546
>ref|NP_194537.1| putative protein; protein id: At4g28080.1 [Arabidopsis thaliana]
gi|7486957|pir||T02909 hypothetical protein T13J8.190 -
Arabidopsis thaliana gi|4455367|emb|CAB36777.1| putative
protein [Arabidopsis thaliana] gi|7269662|emb|CAB79610.1|
putative protein [Arabidopsis thaliana]
Length = 1791
Score = 35.4 bits (80), Expect = 0.52
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -2
Query: 498 KCWGDYSDSEAEIIEVTN 445
KCWGDYSD+E E IEVT+
Sbjct: 1774 KCWGDYSDNEIEQIEVTS 1791
>ref|ZP_00089867.1| hypothetical protein [Azotobacter vinelandii]
Length = 772
Score = 32.0 bits (71), Expect = 5.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 409 KYCQGCAYQGNRMRYSGFDWTEFFYLNFHVRTDY 308
KY GC ++ RM ++ DWT FF N ++ +D+
Sbjct: 508 KYRGGCGFETLRMVWNAEDWTMFFMGNGYMNSDW 541
>ref|NP_510851.1| Predicted CDS, putative N-myristoylated nuclear protein family
member, nematode specific [Caenorhabditis elegans]
gi|25354225|pir||E89756 protein T23E7.3 [imported] -
Caenorhabditis elegans gi|2435548|gb|AAB71259.1|
Hypothetical protein T23E7.3 [Caenorhabditis elegans]
Length = 196
Score = 32.0 bits (71), Expect = 5.7
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 35 KLVLQLEKPNKGLENETLWSCNLAFSRQSTMTSTLQLHS*QAKKCS*RRLKQYTLLSSCS 214
KL LEKP + + L CN++FS L ++S + ++ + L Y +S S
Sbjct: 71 KLSAHLEKPLRSFSRQVLQRCNISFSSYENRLLILNIYSIRHRRLKAKLLLLYKFISGTS 130
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,715,034
Number of Sequences: 1393205
Number of extensions: 8894560
Number of successful extensions: 19972
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19964
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
