Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010711A_C01 KMC010711A_c01
(482 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T12524 hypothetical protein DKFZp434L013.1 - human (fragmen... 33 1.3
ref|NP_006018.2| exonuclease 1, isoform b; rad2 nuclease family ... 33 1.3
ref|NP_569082.1| exonuclease 1, isoform b; Rad2 nuclease family ... 33 1.3
gb|ZP_00122555.1| hypothetical protein [Haemophilus somnus 129PT] 32 4.8
ref|NP_726904.1| CG32790-PA [Drosophila melanogaster] gi|2283165... 31 6.2
>pir||T12524 hypothetical protein DKFZp434L013.1 - human (fragment)
gi|5262584|emb|CAB45733.1| hypothetical protein [Homo
sapiens]
Length = 672
Score = 33.5 bits (75), Expect = 1.3
Identities = 31/92 (33%), Positives = 41/92 (43%), Gaps = 9/92 (9%)
Frame = +3
Query: 123 LKHVKCYTLPFRNKMPSNYYFF*SDTLEK*QSTTRH*P---------SKPPAPPKKRGHH 275
L H P RNK+P Y +D+L STT+ P SK PA +KR HH
Sbjct: 550 LSHFSKKDTPLRNKVPGLYKSSSADSL----STTKIKPLGPARASGLSKKPASIQKRKHH 605
Query: 276 LHRS*P*KLITAAQLIDVWLHMKQKKDHLKKP 371
+ P I +L ++W + KKD K P
Sbjct: 606 NAENKPGLQI---KLNELWKNFGFKKDSEKLP 634
>ref|NP_006018.2| exonuclease 1, isoform b; rad2 nuclease family member, homolog of
S. cerevisiae exonuclease 1 [Homo sapiens]
gi|3822433|gb|AAC69879.1| exonuclease Ib [Homo sapiens]
gi|23664448|gb|AAN39382.1| exonuclease 1 [Homo sapiens]
Length = 846
Score = 33.5 bits (75), Expect = 1.3
Identities = 31/92 (33%), Positives = 41/92 (43%), Gaps = 9/92 (9%)
Frame = +3
Query: 123 LKHVKCYTLPFRNKMPSNYYFF*SDTLEK*QSTTRH*P---------SKPPAPPKKRGHH 275
L H P RNK+P Y +D+L STT+ P SK PA +KR HH
Sbjct: 724 LSHFSKKDTPLRNKVPGLYKSSSADSL----STTKIKPLGPARASGLSKKPASIQKRKHH 779
Query: 276 LHRS*P*KLITAAQLIDVWLHMKQKKDHLKKP 371
+ P I +L ++W + KKD K P
Sbjct: 780 NAENKPGLQI---KLNELWKNFGFKKDSEKLP 808
>ref|NP_569082.1| exonuclease 1, isoform b; Rad2 nuclease family member, homolog of
S. cerevisiae exonuclease 1 [Homo sapiens]
gi|13960099|gb|AAH07491.1|AAH07491 exonuclease 1 [Homo
sapiens]
Length = 846
Score = 33.5 bits (75), Expect = 1.3
Identities = 31/92 (33%), Positives = 41/92 (43%), Gaps = 9/92 (9%)
Frame = +3
Query: 123 LKHVKCYTLPFRNKMPSNYYFF*SDTLEK*QSTTRH*P---------SKPPAPPKKRGHH 275
L H P RNK+P Y +D+L STT+ P SK PA +KR HH
Sbjct: 724 LSHFSKKDTPLRNKVPGLYKSSSADSL----STTKIKPLGPARASGLSKKPASIQKRKHH 779
Query: 276 LHRS*P*KLITAAQLIDVWLHMKQKKDHLKKP 371
+ P I +L ++W + KKD K P
Sbjct: 780 NAENKPGLQI---KLNELWKNFGFKKDSEKLP 808
>gb|ZP_00122555.1| hypothetical protein [Haemophilus somnus 129PT]
Length = 421
Score = 31.6 bits (70), Expect = 4.8
Identities = 18/44 (40%), Positives = 25/44 (55%), Gaps = 2/44 (4%)
Frame = +1
Query: 127 NMSSVTHYLSEIKCHQIT--IFFNQIH*KNNNQPHGTNHQNPQP 252
NM +V LSEIK +Q+T + +N+I N QPH + QP
Sbjct: 282 NMLTVNEVLSEIKANQVTTLLVYNKIDQVENIQPHIEFDEENQP 325
>ref|NP_726904.1| CG32790-PA [Drosophila melanogaster] gi|22831659|gb|AAN09115.1|
CG32790-PA [Drosophila melanogaster]
Length = 432
Score = 31.2 bits (69), Expect = 6.2
Identities = 14/31 (45%), Positives = 18/31 (57%)
Frame = +1
Query: 208 NNNQPHGTNHQNPQPRQKNGGTIFTAPSPES 300
NNN + N+ PQ ++K GG A SPES
Sbjct: 60 NNNNSNSNNNNLPQKKRKQGGQGHIADSPES 90
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,140,144
Number of Sequences: 1393205
Number of extensions: 9831854
Number of successful extensions: 42510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 40992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42440
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
