Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010710A_C01 KMC010710A_c01
(320 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q48457|YC11_KLEPN Hypothetical 55.0 kDa protein in cps region... 32 2.8
gb|ZP_00095815.1| hypothetical protein [Novosphingobium aromatic... 31 3.6
gb|EAA38633.1| GLP_155_41978_36969 [Giardia lamblia ATCC 50803] 31 4.8
ref|NP_620640.1| TBP-associated factor 5 isoform 2; TATA box bin... 30 6.2
ref|NP_008882.2| TBP-associated factor 5 isoform 1; TATA box bin... 30 6.2
>sp|Q48457|YC11_KLEPN Hypothetical 55.0 kDa protein in cps region (ORF11)
gi|747670|dbj|BAA04782.1| ORF11 [Klebsiella pneumoniae]
Length = 485
Score = 31.6 bits (70), Expect = 2.8
Identities = 20/56 (35%), Positives = 31/56 (54%), Gaps = 1/56 (1%)
Frame = -3
Query: 222 YILSQSIKS*LEAEFLSEDHEGNAHDPFIYTSLFPLVYTLPPVLLPSVC-ICISKL 58
+++ Q+I + L FL + GN +I + P V+TLP +LL VC I I K+
Sbjct: 388 FLICQAINALLSYFFLLKPVLGNCIVDYINSFFIPFVHTLPMILLLLVCDIYIDKI 443
>gb|ZP_00095815.1| hypothetical protein [Novosphingobium aromaticivorans]
Length = 600
Score = 31.2 bits (69), Expect = 3.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 117 LVYTLPPVLLPSVCICISKLINLIDNLLMCRFSN 16
L Y LP V+LP C+ +S LI L+ + L +N
Sbjct: 55 LTYQLPAVMLPGTCVVVSPLIALMHDQLRSATAN 88
>gb|EAA38633.1| GLP_155_41978_36969 [Giardia lamblia ATCC 50803]
Length = 1669
Score = 30.8 bits (68), Expect = 4.8
Identities = 16/46 (34%), Positives = 25/46 (53%), Gaps = 3/46 (6%)
Frame = -3
Query: 138 IYTSLFPLVYTLPPVLLPSVCICISK---LINLIDNLLMCRFSNHY 10
IY + +YTLP V + S + +++ +IN I + L C F HY
Sbjct: 700 IYAQFYSKLYTLPQVTVQSELLRLAESLSIINTIPSKLSCLFCPHY 745
>ref|NP_620640.1| TBP-associated factor 5 isoform 2; TATA box binding protein
(TBP)-associated factor 2D; TAF5 RNA polymerase II, TATA
box binding protein (TBP)-associated factor, 100 kD;
TATA box binding protein (TBP)-associated factor, RNA
polymerase II, D, 100kD; transcription initiation factor
TFIID 100 kD subunit [Homo sapiens]
Length = 745
Score = 30.4 bits (67), Expect = 6.2
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = -3
Query: 315 TLPTQSTAVSSLRFSRRNLLFAAGA 241
T T+ST V L F+RRNL+ AAGA
Sbjct: 717 TYMTKSTPVVHLHFTRRNLVLAAGA 741
>ref|NP_008882.2| TBP-associated factor 5 isoform 1; TATA box binding protein
(TBP)-associated factor 2D; TAF5 RNA polymerase II, TATA
box binding protein (TBP)-associated factor, 100 kD;
TATA box binding protein (TBP)-associated factor, RNA
polymerase II, D, 100kD; transcription initiation factor
TFIID 100 kD subunit [Homo sapiens]
Length = 800
Score = 30.4 bits (67), Expect = 6.2
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = -3
Query: 315 TLPTQSTAVSSLRFSRRNLLFAAGA 241
T T+ST V L F+RRNL+ AAGA
Sbjct: 772 TYMTKSTPVVHLHFTRRNLVLAAGA 796
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 254,883,054
Number of Sequences: 1393205
Number of extensions: 4706327
Number of successful extensions: 11068
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11066
length of database: 448,689,247
effective HSP length: 82
effective length of database: 334,446,437
effective search space used: 8026714488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
