Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010692A_C01 KMC010692A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC18308.1| hypothetical protein [Neurospora crassa] gi|2892... 35 0.41
ref|XP_215665.1| similar to CG4025-PA [Drosophila melanogaster] ... 32 3.5
ref|XP_059238.1| similar to RIKEN cDNA 2610318G18 [Mus musculus]... 32 3.5
ref|NP_705373.1| hypothetical protein [Plasmodium falciparum 3D7... 32 5.9
dbj|BAB30020.1| unnamed protein product [Mus musculus] 31 7.7
>emb|CAC18308.1| hypothetical protein [Neurospora crassa] gi|28922769|gb|EAA31991.1|
hypothetical protein ( (AL451022) hypothetical protein
[Neurospora crassa] )
Length = 593
Score = 35.4 bits (80), Expect = 0.41
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 208 CSTPEKPKKPIKHYFSTNTTKLRQKSDRIYCNL 306
C+T P+K + +F N RQ DR++CNL
Sbjct: 109 CNTNAPPRKAVSQFFGRNKKATRQMPDRVWCNL 141
>ref|XP_215665.1| similar to CG4025-PA [Drosophila melanogaster] [Rattus norvegicus]
Length = 130
Score = 32.3 bits (72), Expect = 3.5
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +1
Query: 343 IVISYKQVHIYYGRANFIVYLREADLVLKIKHPINTTIMAKFRL-VKDKCE 492
I + YKQVH N I+ L +A LVL I + +++A F++ + +CE
Sbjct: 71 IYVRYKQVHALNPEENLIIKLNKAGLVLGILSCLGLSLVANFQVCLLTQCE 121
>ref|XP_059238.1| similar to RIKEN cDNA 2610318G18 [Mus musculus] [Homo sapiens]
gi|28422696|gb|AAH47025.1| Similar to RIKEN cDNA
2610318G18 gene [Homo sapiens]
Length = 266
Score = 32.3 bits (72), Expect = 3.5
Identities = 18/48 (37%), Positives = 25/48 (51%)
Frame = +1
Query: 328 LIYVRIVISYKQVHIYYGRANFIVYLREADLVLKIKHPINTTIMAKFR 471
L I + YKQVH N I+ L +A LVL I + +I+A F+
Sbjct: 66 LCIATIYVRYKQVHALSPEENVIIKLNKAGLVLGILSCLGLSIVANFQ 113
>ref|NP_705373.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615618|emb|CAD52610.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1828
Score = 31.6 bits (70), Expect = 5.9
Identities = 17/63 (26%), Positives = 27/63 (41%), Gaps = 3/63 (4%)
Frame = -2
Query: 513 FSKFAHSFTFVLHETKFCHYSCVYWVFNFQYQVCFSE---VYDEVSSAIVNMDLFVADYY 343
F S T + ++ Y CVY+ FN QY F +YD + + + +F D
Sbjct: 820 FENILFSNTIFIDINRYIKYKCVYFFFNTQYTYSFVNTYFLYDTLRNPSPSFKIFNRDND 879
Query: 342 PHV 334
H+
Sbjct: 880 KHI 882
>dbj|BAB30020.1| unnamed protein product [Mus musculus]
Length = 267
Score = 31.2 bits (69), Expect = 7.7
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 4/57 (7%)
Frame = +1
Query: 349 ISYKQVHIYYGRANFIVYLREADLVLKIKHPINTTIMAKFR----LVKDKCEAVCEF 507
+ YKQVH N I+ L +A LVL I + +++A F+ + C AV F
Sbjct: 73 VRYKQVHALNPEENLIIKLNKAGLVLGILSCLGLSLVANFQKSTLFIVHVCGAVLAF 129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,058,386
Number of Sequences: 1393205
Number of extensions: 8053230
Number of successful extensions: 16572
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16568
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
