Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010680A_C01 KMC010680A_c01
(489 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704937.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.59
ref|NP_665730.1| G-protein coupled receptor; rc 56.1.3 gene; sim... 33 1.3
ref|NP_634872.1| conserved protein [Methanosarcina mazei Goe1] g... 33 1.7
ref|NP_616604.1| predicted protein [Methanosarcina acetivorans s... 33 2.2
ref|NP_705077.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.8
>ref|NP_704937.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615182|emb|CAD52172.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 9271
Score = 34.7 bits (78), Expect = 0.59
Identities = 36/113 (31%), Positives = 49/113 (42%), Gaps = 2/113 (1%)
Frame = +3
Query: 69 DIIKVNNKNNFI*TLPARQDK--KKLTINFKFKLKHKILNNQLQQYSSPHFIHKQTSKDL 242
+I KV NKNN I + R++K K IN +L +K NN + + K
Sbjct: 973 NIKKVENKNNNIISKTIRKEKNSKANNINSNLRLINKNNNN-----------NNKKCKTN 1021
Query: 243 ASHSLSSSS*RAWRNLHHRHQNS*NKAQKNTPAVICHPKKQCGARFLRVNHMS 401
S S++SSS A +R N K VI K+CG F NH+S
Sbjct: 1022 GSDSINSSSVCA---NSYRQNNQTQKNNSEIDEVINLQLKKCGKTFDNSNHIS 1071
>ref|NP_665730.1| G-protein coupled receptor; rc 56.1.3 gene; similar to mouse MrgA6
G protein-coupled receptor [Rattus norvegicus]
gi|16075339|emb|CAC84592.1| G-protein coupled receptor
[Rattus norvegicus]
Length = 331
Score = 33.5 bits (75), Expect = 1.3
Identities = 27/83 (32%), Positives = 41/83 (48%), Gaps = 1/83 (1%)
Frame = -3
Query: 292 CKFLQARQEDEDKECEARSLDVCLCMKWGELYCCSWLFSILCFSLNLKLIVNFFLSCLAG 113
C FL + E +++ CL + C +LF +LC S +L L+V F C AG
Sbjct: 177 CGFLDTKYEKDNR---------CLASNFFTAACLIFLFVVLCLS-SLALLVRSF--CGAG 224
Query: 112 NV*MKLFLLF-TFMISCLCWIFC 47
MKL L+ T M++ L ++ C
Sbjct: 225 R--MKLTRLYATIMLTVLVFLLC 245
>ref|NP_634872.1| conserved protein [Methanosarcina mazei Goe1]
gi|20907487|gb|AAM32544.1| conserved protein
[Methanosarcina mazei Goe1]
Length = 213
Score = 33.1 bits (74), Expect = 1.7
Identities = 18/44 (40%), Positives = 23/44 (51%)
Frame = +3
Query: 201 SSPHFIHKQTSKDLASHSLSSSS*RAWRNLHHRHQNS*NKAQKN 332
+S +HK TS+DLA H S +RN RH N KA K+
Sbjct: 92 NSTSTMHKLTSRDLAPHDFSFDEMTEYRNTQIRHLNDLIKAYKS 135
>ref|NP_616604.1| predicted protein [Methanosarcina acetivorans str. C2A]
gi|19915556|gb|AAM05084.1| predicted protein
[Methanosarcina acetivorans str. C2A]
Length = 214
Score = 32.7 bits (73), Expect = 2.2
Identities = 18/44 (40%), Positives = 24/44 (53%)
Frame = +3
Query: 201 SSPHFIHKQTSKDLASHSLSSSS*RAWRNLHHRHQNS*NKAQKN 332
+S +HK TSKDLA H S + +R+ RH N KA K+
Sbjct: 92 NSTSTMHKLTSKDLAPHDFSFDTMTEYRHAQIRHLNDLIKAYKS 135
>ref|NP_705077.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615322|emb|CAD52313.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 938
Score = 32.0 bits (71), Expect = 3.8
Identities = 15/47 (31%), Positives = 26/47 (54%)
Frame = +3
Query: 48 QKIQHKHDIIKVNNKNNFI*TLPARQDKKKLTINFKFKLKHKILNNQ 188
Q IQ+K+++ +NN NN + +D K+ + L+H+ L NQ
Sbjct: 713 QYIQNKNNLYNINNINNINSNIKINEDNTKMVSHNILSLEHQNLKNQ 759
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,822,746
Number of Sequences: 1393205
Number of extensions: 8013402
Number of successful extensions: 21365
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21351
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
