Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010672A_C01 KMC010672A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA01002.1| ebiP7774 [Anopheles gambiae str. PEST] 32 3.9
gb|AAM64781.1| transcription factor [Arabidopsis thaliana] 31 6.7
pir||F86353 protein F2E2.14 [imported] - Arabidopsis thaliana gi... 31 6.7
ref|NP_564156.1| bZIP transcription factor, TGA3; protein id: At... 31 6.7
ref|NP_509942.1| Ion transport protein family member [Caenorhabd... 31 6.7
>gb|EAA01002.1| ebiP7774 [Anopheles gambiae str. PEST]
Length = 330
Score = 32.0 bits (71), Expect = 3.9
Identities = 18/57 (31%), Positives = 27/57 (46%), Gaps = 2/57 (3%)
Frame = +3
Query: 39 LLEYFQTKMSVLSII--LSTFSIKSVSSKHHRSHLYVTACQKCQTDEKPWAAWPSYM 203
LL Y T+M + + S F +S +H S YV+ +E PW WP+Y+
Sbjct: 190 LLRYLMTEMELPPNVKLFSGFVFRSAPHRHRSSKWYVSL------EEYPWDMWPTYV 240
>gb|AAM64781.1| transcription factor [Arabidopsis thaliana]
Length = 366
Score = 31.2 bits (69), Expect = 6.7
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 349 SEQRCKLQVELGSAVLVIMI-SCLLHNSCMFCMKQNACKEF*FFL 480
SE R LQ +G L +++ SCL H + +F MK +A K FFL
Sbjct: 168 SEIRTALQAHIGDIELKMLVDSCLNHYANLFRMKADAAKADVFFL 212
>pir||F86353 protein F2E2.14 [imported] - Arabidopsis thaliana
gi|9280681|gb|AAF86550.1|AC069252_9 F2E2.14 [Arabidopsis
thaliana]
Length = 384
Score = 31.2 bits (69), Expect = 6.7
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 349 SEQRCKLQVELGSAVLVIMI-SCLLHNSCMFCMKQNACKEF*FFL 480
SE R LQ +G L +++ SCL H + +F MK +A K FFL
Sbjct: 186 SEIRTALQAHIGDIELKMLVDSCLNHYANLFRMKADAAKADVFFL 230
>ref|NP_564156.1| bZIP transcription factor, TGA3; protein id: At1g22070.1, supported
by cDNA: 33016., supported by cDNA: gi_304112
[Arabidopsis thaliana] gi|1076421|pir||S46523
transcription factor TGA3 - Arabidopsis thaliana
gi|304113|gb|AAA32873.1| transcription factor
Length = 384
Score = 31.2 bits (69), Expect = 6.7
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 349 SEQRCKLQVELGSAVLVIMI-SCLLHNSCMFCMKQNACKEF*FFL 480
SE R LQ +G L +++ SCL H + +F MK +A K FFL
Sbjct: 186 SEIRTALQAHIGDIELKMLVDSCLNHYANLFRMKADAAKADVFFL 230
>ref|NP_509942.1| Ion transport protein family member [Caenorhabditis elegans]
gi|7510441|pir||T27364 hypothetical protein Y71H9A.1 -
Caenorhabditis elegans gi|3881291|emb|CAA21749.1|
Hypothetical protein Y71H9A.1 [Caenorhabditis elegans]
Length = 700
Score = 31.2 bits (69), Expect = 6.7
Identities = 16/53 (30%), Positives = 26/53 (48%)
Frame = +2
Query: 239 TMPMCLSEHKYLTMGPRKVWTRYKYNC*LMSIVEDEGQNKGVNYRLSLVLPFW 397
T +CL + G + WTRY Y+ + VE+ + G+ + L+ V FW
Sbjct: 351 TEQLCLRCWELGVEGANQGWTRYNYSLMVNQSVEEYNNSVGLGHVLTPVWTFW 403
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,003,442
Number of Sequences: 1393205
Number of extensions: 8154375
Number of successful extensions: 17914
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 17513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17914
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
