Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010663A_C01 KMC010663A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_376985.1| 192aa long conserved hypothetical protein [Sulf... 34 1.1
gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protei... 34 1.1
gb|AAK83559.1|AF278857_1 putative disease resistance gene protei... 34 1.1
ref|NP_704103.1| unknown [Plasmodium falciparum 3D7] gi|23498841... 33 3.3
emb|CAC42230.1| Krueppel-like protein [Plasmodium falciparum 3D7] 33 3.3
>ref|NP_376985.1| 192aa long conserved hypothetical protein [Sulfolobus tokodaii]
gi|15622101|dbj|BAB66094.1| 192aa long conserved
hypothetical protein [Sulfolobus tokodaii]
Length = 192
Score = 34.3 bits (77), Expect = 1.1
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 7/105 (6%)
Frame = +3
Query: 105 TYIETEGVLHNKCNLSYTNAYLEIPIQLVLFVINTFNLTYLVYAYGSF*VLS*QEYAIAC 284
TYI + G+L++ NL + + YL I I LFV T+ AY +L EY
Sbjct: 33 TYIVSIGILYSIPNLQFLSTYLFISI---LFVYLTYTSILFYKAYRVREILEPPEYKSKY 89
Query: 285 YMLSSPMYFLCSMSTHRM----YFTYFS*PYEIY---VSDEIIHI 398
+ ++ ++ + + + + YF+Y+ IY VS++I I
Sbjct: 90 ILFTAILFIIIGVWIYTLTIFNYFSYYIVSIVIYTAIVSEQIFQI 134
>gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Poncirus trifoliata]
Length = 890
Score = 34.3 bits (77), Expect = 1.1
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Frame = +3
Query: 72 FFNMCASSISDTYIETEGVLHNKC-NLSYTNAYLEIPIQLV-----LFVINTFNLTYLVY 233
+ ++ S IS+ E + +++ KC NL YT L+IP+QL+ L V+ F Y +
Sbjct: 590 YLDLSTSLISEIPEELKALVNLKCLNLEYTGRLLKIPLQLISNFSRLHVLRMFGNAY--F 647
Query: 234 AYGSF 248
+YG++
Sbjct: 648 SYGNY 652
>gb|AAK83559.1|AF278857_1 putative disease resistance gene protein [Poncirus trifoliata]
Length = 479
Score = 34.3 bits (77), Expect = 1.1
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Frame = +3
Query: 72 FFNMCASSISDTYIETEGVLHNKC-NLSYTNAYLEIPIQLV-----LFVINTFNLTYLVY 233
+ ++ S IS+ E + +++ KC NL YT L+IP+QL+ L V+ F Y +
Sbjct: 325 YLDLSTSLISEIPEELKALVNLKCLNLEYTGRLLKIPLQLISNFSRLHVLRMFGNAY--F 382
Query: 234 AYGSF 248
+YG++
Sbjct: 383 SYGNY 387
>ref|NP_704103.1| unknown [Plasmodium falciparum 3D7] gi|23498841|emb|CAD50918.1|
unknown [Plasmodium falciparum 3D7]
Length = 317
Score = 32.7 bits (73), Expect = 3.3
Identities = 24/71 (33%), Positives = 36/71 (49%)
Frame = +3
Query: 24 FFFFFFWF*KVNKINAFFNMCASSISDTYIETEGVLHNKCNLSYTNAYLEIPIQLVLFVI 203
FFFFFF+F K+ KI FF++C + I V H L+ + ++ IP + LF+
Sbjct: 109 FFFFFFFFLKLYKILIFFSLCNFFL----INLLYVGHLLVYLNLKDDFIFIPFE-SLFIF 163
Query: 204 NTFNLTYLVYA 236
F + YA
Sbjct: 164 FLFFAICIFYA 174
>emb|CAC42230.1| Krueppel-like protein [Plasmodium falciparum 3D7]
Length = 1266
Score = 32.7 bits (73), Expect = 3.3
Identities = 16/53 (30%), Positives = 26/53 (48%)
Frame = -3
Query: 570 YHYLSSLFIFYM*IDLYFRHTFYIFWL*MWFNLYIIYFLKFYIFSLFWFTMQV 412
Y Y+ Y+ I +Y YI+ L + Y +YF+ F+ F LF F+ +
Sbjct: 1209 YVYIYIYIYIYIYIYIYIFIYLYIYSLYFYIGTYSLYFIFFFFFVLFIFSCSI 1261
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,475,109
Number of Sequences: 1393205
Number of extensions: 10770677
Number of successful extensions: 25951
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 24256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25792
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
