Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010659A_C01 KMC010659A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197996.1| CLC-d chloride channel protein; protein id: At5... 84 7e-16
emb|CAA96065.1| CLC-d chloride channel protein [Arabidopsis thal... 84 7e-16
gb|AAO19370.1| putative CLC-d chloride channel protein [Oryza sa... 84 9e-16
gb|AAC26247.2| Arabidopsis thaliana CLC-d chloride channel prote... 84 1e-15
pir||T01843 chloride channel protein homolog F9D12.10 - Arabidop... 82 3e-15
>ref|NP_197996.1| CLC-d chloride channel protein; protein id: At5g26240.1
[Arabidopsis thaliana]
Length = 792
Score = 84.3 bits (207), Expect = 7e-16
Identities = 43/60 (71%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Frame = -3
Query: 498 EDMSLTKVYHLFXQLGLRHLFVVPRPSRVLGLITRKDLLIEDT-DANTLELQATSSSASR 322
EDMSLTKVY+LF QLGLRHLFVVPRPSRV+GLITRKDLLIE+ +++ +ELQ ++S R
Sbjct: 713 EDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENGESSAVELQQSTSVRGR 772
>emb|CAA96065.1| CLC-d chloride channel protein [Arabidopsis thaliana]
Length = 792
Score = 84.3 bits (207), Expect = 7e-16
Identities = 43/60 (71%), Positives = 52/60 (86%), Gaps = 1/60 (1%)
Frame = -3
Query: 498 EDMSLTKVYHLFXQLGLRHLFVVPRPSRVLGLITRKDLLIEDT-DANTLELQATSSSASR 322
EDMSLTKVY+LF QLGLRHLFVVPRPSRV+GLITRKDLLIE+ +++ +ELQ ++S R
Sbjct: 713 EDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENGESSAVELQQSTSVRGR 772
>gb|AAO19370.1| putative CLC-d chloride channel protein [Oryza sativa (japonica
cultivar-group)]
Length = 782
Score = 84.0 bits (206), Expect = 9e-16
Identities = 43/58 (74%), Positives = 50/58 (86%), Gaps = 1/58 (1%)
Frame = -3
Query: 498 EDMSLTKVYHLFXQLGLRHLFVVPRPSRVLGLITRKDLLIEDTDAN-TLELQATSSSA 328
EDMSL KVY+LF QLGLRH+FVVPRPSRV+GLITR+DLL+E+ N T ELQ+TS SA
Sbjct: 709 EDMSLAKVYNLFRQLGLRHIFVVPRPSRVVGLITRQDLLLEENGNNVTTELQSTSGSA 766
>gb|AAC26247.2| Arabidopsis thaliana CLC-d chloride channel protein (GB:Z71450)
Length = 772
Score = 83.6 bits (205), Expect = 1e-15
Identities = 42/56 (75%), Positives = 51/56 (91%), Gaps = 1/56 (1%)
Frame = -3
Query: 498 EDMSLTKVYHLFXQLGLRHLFVVPRPSRVLGLITRKDLLIEDT-DANTLELQATSS 334
EDMSLTKVY+LF QLGLRHLFVVPRPSRV+GLITRKDLLIE+ +++ +ELQ ++S
Sbjct: 713 EDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENGESSAVELQQSTS 768
>pir||T01843 chloride channel protein homolog F9D12.10 - Arabidopsis thaliana
Length = 800
Score = 82.4 bits (202), Expect = 3e-15
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Frame = -3
Query: 498 EDMSLTKVYHLFXQLGLRHLFVVPRPSRVLGLITRKDLLIEDT-DANTLELQATSSSASR 322
EDMSLTKVY+LF QLGLRHLFVVPRPSRV+GLITRKDLLIE+ +++ +ELQ S +
Sbjct: 726 EDMSLTKVYNLFRQLGLRHLFVVPRPSRVIGLITRKDLLIEENGESSAVELQQGRYSETA 785
Query: 321 *KID 310
++D
Sbjct: 786 TRMD 789
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,111,949
Number of Sequences: 1393205
Number of extensions: 8488603
Number of successful extensions: 21030
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 20468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21024
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
