Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010640A_C01 KMC010640A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC15488.1| similar to RING zinc finger protein [Oryza sativ... 234 4e-61
dbj|BAA96602.1| unnamed protein product [Oryza sativa (japonica ... 234 6e-61
ref|NP_567118.1| seven in absentia-like protein; protein id: At3... 230 8e-60
pir||T47971 seven in absentia-like protein - Arabidopsis thalian... 230 8e-60
dbj|BAB09798.1| developmental protein SINA (seven in absentia) [... 229 2e-59
>dbj|BAC15488.1| similar to RING zinc finger protein [Oryza sativa (japonica
cultivar-group)] gi|29126067|dbj|BAC16053.2| similar to
RING zinc finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 333
Score = 234 bits (598), Expect = 4e-61
Identities = 113/122 (92%), Positives = 117/122 (95%), Gaps = 1/122 (0%)
Frame = -1
Query: 569 KSNPQEVENATWMLTV-FSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSL 393
KSNP EVENATWMLTV FSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDD EAKNY+YSL
Sbjct: 212 KSNPHEVENATWMLTVVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDAEAKNYSYSL 271
Query: 392 EVGGNGRKMIWQGVPRSIRDSHRMVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWK 213
EVGG+GRKM WQGVPRSIRDSHR VRDS+DGLIIQRNMALFFSGGD+KELKLRVTGRIWK
Sbjct: 272 EVGGSGRKMTWQGVPRSIRDSHRKVRDSYDGLIIQRNMALFFSGGDKKELKLRVTGRIWK 331
Query: 212 EQ 207
EQ
Sbjct: 332 EQ 333
>dbj|BAA96602.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 381
Score = 234 bits (597), Expect = 6e-61
Identities = 107/121 (88%), Positives = 116/121 (95%)
Frame = -1
Query: 569 KSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLE 390
KSNP+EVENATWMLTVF CFGQYFCLHFEAFQLGMAPVY+AFLRFMGD+NEA+NY+YSLE
Sbjct: 248 KSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLE 307
Query: 389 VGGNGRKMIWQGVPRSIRDSHRMVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKE 210
VG NGRKM+W+G PRS+RDSHR VRDS DGLIIQRNMALFFSGGDRKELKLR+TGRIWKE
Sbjct: 308 VGANGRKMVWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRITGRIWKE 367
Query: 209 Q 207
Q
Sbjct: 368 Q 368
>ref|NP_567118.1| seven in absentia-like protein; protein id: At3g61790.1, supported
by cDNA: 115713. [Arabidopsis thaliana]
gi|28393157|gb|AAO42011.1| putative seven in absentia
protein [Arabidopsis thaliana]
gi|28827536|gb|AAO50612.1| putative seven in absentia
protein [Arabidopsis thaliana]
Length = 326
Score = 230 bits (587), Expect = 8e-60
Identities = 107/121 (88%), Positives = 114/121 (93%)
Frame = -1
Query: 569 KSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLE 390
KSNP+EVENATWMLTVF CFGQYFCLHFEAFQLGMAPVY+AFLRFMGD+ EA+NY YSLE
Sbjct: 191 KSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYNYSLE 250
Query: 389 VGGNGRKMIWQGVPRSIRDSHRMVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKE 210
VGG GRK+IW+G PRS+RDSHR VRDS DGLIIQRNMALFFSGGDRKELKLRVTGRIWKE
Sbjct: 251 VGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKE 310
Query: 209 Q 207
Q
Sbjct: 311 Q 311
>pir||T47971 seven in absentia-like protein - Arabidopsis thaliana
gi|6850870|emb|CAB71109.1| seven in absentia-like
protein [Arabidopsis thaliana]
Length = 315
Score = 230 bits (587), Expect = 8e-60
Identities = 107/121 (88%), Positives = 114/121 (93%)
Frame = -1
Query: 569 KSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLE 390
KSNP+EVENATWMLTVF CFGQYFCLHFEAFQLGMAPVY+AFLRFMGD+ EA+NY YSLE
Sbjct: 180 KSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETEARNYNYSLE 239
Query: 389 VGGNGRKMIWQGVPRSIRDSHRMVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKE 210
VGG GRK+IW+G PRS+RDSHR VRDS DGLIIQRNMALFFSGGDRKELKLRVTGRIWKE
Sbjct: 240 VGGYGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKE 299
Query: 209 Q 207
Q
Sbjct: 300 Q 300
>dbj|BAB09798.1| developmental protein SINA (seven in absentia) [Arabidopsis
thaliana]
Length = 263
Score = 229 bits (584), Expect = 2e-59
Identities = 105/121 (86%), Positives = 115/121 (94%)
Frame = -1
Query: 569 KSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYTYSLE 390
KSNP+EVENATWMLTVF CFGQYFCLHFEAFQLGMAPVY+AFLRFMGD+++A+NYTYSLE
Sbjct: 128 KSNPREVENATWMLTVFQCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEDDARNYTYSLE 187
Query: 389 VGGNGRKMIWQGVPRSIRDSHRMVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKE 210
VGG+GRK W+G PRS+RDSHR VRDS DGLIIQRNMALFFSGGD+KELKLRVTGRIWKE
Sbjct: 188 VGGSGRKQTWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDKKELKLRVTGRIWKE 247
Query: 209 Q 207
Q
Sbjct: 248 Q 248
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,162,790
Number of Sequences: 1393205
Number of extensions: 11316673
Number of successful extensions: 29338
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 26188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29311
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
