Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010638A_C01 KMC010638A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO65974.1| putative vacuolar ATPase subunit H protein [Suaed... 161 4e-39
gb|AAK59761.1| AT3g42050/F4M19_10 [Arabidopsis thaliana] 155 3e-37
ref|NP_189791.1| vacuolar H(+)-ATPase subunit-like protein; prot... 155 3e-37
dbj|BAC57732.1| putative vacuolar ATP synthase subunit H [Oryza ... 149 2e-35
emb|CAD27445.1| putative vacuolar ATPase subunit H [Mesembryanth... 147 8e-35
>gb|AAO65974.1| putative vacuolar ATPase subunit H protein [Suaeda maritima subsp.
salsa]
Length = 465
Score = 161 bits (408), Expect = 4e-39
Identities = 81/88 (92%), Positives = 86/88 (97%)
Frame = -3
Query: 537 EENDFQIVRVLITILDSSNDPRTLAVACFDLSQFVQYHPSGRIIVADLKAKERVMKLMNH 358
EENDFQI+RVLITILD+SNDPR+LAVACFDLSQFVQ HPSGRIIV DL+AKERVMKLMNH
Sbjct: 378 EENDFQILRVLITILDTSNDPRSLAVACFDLSQFVQQHPSGRIIVNDLQAKERVMKLMNH 437
Query: 357 ESAEVTKNALLCIQRLFLGAKYASFLQA 274
E+AEVTKNALLCIQRLFLGAKYASFLQA
Sbjct: 438 ENAEVTKNALLCIQRLFLGAKYASFLQA 465
>gb|AAK59761.1| AT3g42050/F4M19_10 [Arabidopsis thaliana]
Length = 441
Score = 155 bits (392), Expect = 3e-37
Identities = 74/88 (84%), Positives = 86/88 (97%)
Frame = -3
Query: 537 EENDFQIVRVLITILDSSNDPRTLAVACFDLSQFVQYHPSGRIIVADLKAKERVMKLMNH 358
EENDFQI+RVL+TILD+S+DPR+LAVACFD+SQF+QYH +GR+IVADLKAKERVMKL+NH
Sbjct: 354 EENDFQILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVIVADLKAKERVMKLINH 413
Query: 357 ESAEVTKNALLCIQRLFLGAKYASFLQA 274
E+AEVTKNA+LCIQRL LGAKYASFLQA
Sbjct: 414 ENAEVTKNAILCIQRLLLGAKYASFLQA 441
>ref|NP_189791.1| vacuolar H(+)-ATPase subunit-like protein; protein id: At3g42050.1,
supported by cDNA: gi_14334993, supported by cDNA:
gi_20147134 [Arabidopsis thaliana]
gi|12585473|sp|Q9LX65|VATH_ARATH Probable vacuolar ATP
synthase subunit H (V-ATPase H subunit) (Vacuolar proton
pump H subunit) (Vacuolar proton pump subunit SFD)
gi|11358916|pir||T48960 vacuolar H(+)-ATPase
subunit-like protein - Arabidopsis thaliana
gi|7801655|emb|CAB91576.1| vacuolar H(+)-ATPase
subunit-like protein [Arabidopsis thaliana]
gi|20147135|gb|AAM10284.1| AT3g42050/F4M19_10
[Arabidopsis thaliana]
Length = 441
Score = 155 bits (392), Expect = 3e-37
Identities = 74/88 (84%), Positives = 86/88 (97%)
Frame = -3
Query: 537 EENDFQIVRVLITILDSSNDPRTLAVACFDLSQFVQYHPSGRIIVADLKAKERVMKLMNH 358
EENDFQI+RVL+TILD+S+DPR+LAVACFD+SQF+QYH +GR+IVADLKAKERVMKL+NH
Sbjct: 354 EENDFQILRVLLTILDTSSDPRSLAVACFDISQFIQYHAAGRVIVADLKAKERVMKLINH 413
Query: 357 ESAEVTKNALLCIQRLFLGAKYASFLQA 274
E+AEVTKNA+LCIQRL LGAKYASFLQA
Sbjct: 414 ENAEVTKNAILCIQRLLLGAKYASFLQA 441
>dbj|BAC57732.1| putative vacuolar ATP synthase subunit H [Oryza sativa (japonica
cultivar-group)]
Length = 452
Score = 149 bits (377), Expect = 2e-35
Identities = 72/87 (82%), Positives = 82/87 (93%)
Frame = -3
Query: 537 EENDFQIVRVLITILDSSNDPRTLAVACFDLSQFVQYHPSGRIIVADLKAKERVMKLMNH 358
EENDFQI+RVL+TI+D+S D LAVAC+DLSQF+QYHPSGRI+VADLKAK+RVMKLMNH
Sbjct: 365 EENDFQILRVLMTIIDTSADTTALAVACYDLSQFLQYHPSGRIVVADLKAKDRVMKLMNH 424
Query: 357 ESAEVTKNALLCIQRLFLGAKYASFLQ 277
E+AEV KNALLC+QRLFLGAKYASFLQ
Sbjct: 425 ENAEVRKNALLCVQRLFLGAKYASFLQ 451
>emb|CAD27445.1| putative vacuolar ATPase subunit H [Mesembryanthemum crystallinum]
Length = 470
Score = 147 bits (371), Expect = 8e-35
Identities = 77/90 (85%), Positives = 85/90 (93%), Gaps = 2/90 (2%)
Frame = -3
Query: 537 EENDFQIVRVLITILDSSNDPRTLAVA-C-FDLSQFVQYHPSGRIIVADLKAKERVMKLM 364
EENDFQI+RVLITILD+S+DPR+LAV C FDLSQF+Q HP+GR+IV DLKAKERVMKLM
Sbjct: 381 EENDFQILRVLITILDTSSDPRSLAVCKCEFDLSQFIQNHPAGRMIVNDLKAKERVMKLM 440
Query: 363 NHESAEVTKNALLCIQRLFLGAKYASFLQA 274
NHE+AEVTKNALLCIQRLFLGAKYASFLQA
Sbjct: 441 NHENAEVTKNALLCIQRLFLGAKYASFLQA 470
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,577,146
Number of Sequences: 1393205
Number of extensions: 8873879
Number of successful extensions: 20166
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 19775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20163
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
