Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010632A_C01 KMC010632A_c01
(405 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62969.1| unknown [Arabidopsis thaliana] 54 6e-07
ref|NP_567478.1| Expressed protein; protein id: At4g15880.1, sup... 54 6e-07
dbj|BAC42191.1| unknown protein [Arabidopsis thaliana] 44 6e-04
ref|NP_187347.1| hypothetical protein; protein id: At3g06910.1 [... 44 6e-04
ref|NP_191978.1| hypothetical protein; protein id: At4g00690.1 [... 38 0.026
>gb|AAM62969.1| unknown [Arabidopsis thaliana]
Length = 57
Score = 53.5 bits (127), Expect = 6e-07
Identities = 24/27 (88%), Positives = 25/27 (91%)
Frame = -3
Query: 403 LGLCFHPEHMPYFRLRTAKEILRLKAD 323
LGLCF EHMPYFRLRTAKEILRL+AD
Sbjct: 31 LGLCFSQEHMPYFRLRTAKEILRLRAD 57
>ref|NP_567478.1| Expressed protein; protein id: At4g15880.1, supported by cDNA:
gi_14423393, supported by cDNA: gi_20148438 [Arabidopsis
thaliana] gi|14423394|gb|AAK62379.1|AF386934_1 Unknown
protein [Arabidopsis thaliana]
gi|20148439|gb|AAM10110.1| unknown protein [Arabidopsis
thaliana]
Length = 489
Score = 53.5 bits (127), Expect = 6e-07
Identities = 24/27 (88%), Positives = 25/27 (91%)
Frame = -3
Query: 403 LGLCFHPEHMPYFRLRTAKEILRLKAD 323
LGLCF EHMPYFRLRTAKEILRL+AD
Sbjct: 463 LGLCFSQEHMPYFRLRTAKEILRLRAD 489
>dbj|BAC42191.1| unknown protein [Arabidopsis thaliana]
Length = 502
Score = 43.5 bits (101), Expect = 6e-04
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -3
Query: 403 LGLCFHPEHMPYFRLRTAKEILRLKAD 323
L LCF E MPYFR RTAKEIL+LKA+
Sbjct: 476 LDLCFTQEQMPYFRARTAKEILQLKAE 502
>ref|NP_187347.1| hypothetical protein; protein id: At3g06910.1 [Arabidopsis
thaliana] gi|6728998|gb|AAF26995.1|AC016827_6
hypothetical protein [Arabidopsis thaliana]
Length = 478
Score = 43.5 bits (101), Expect = 6e-04
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -3
Query: 403 LGLCFHPEHMPYFRLRTAKEILRLKAD 323
L LCF E MPYFR RTAKEIL+LKA+
Sbjct: 452 LDLCFTQEQMPYFRARTAKEILQLKAE 478
>ref|NP_191978.1| hypothetical protein; protein id: At4g00690.1 [Arabidopsis
thaliana] gi|7486563|pir||T01233 hypothetical protein
F6N23.7 - Arabidopsis thaliana gi|3047118|gb|AAC13629.1|
F6N23.7 gene product [Arabidopsis thaliana]
gi|7267408|emb|CAB80878.1| hypothetical protein
[Arabidopsis thaliana]
Length = 233
Score = 38.1 bits (87), Expect = 0.026
Identities = 17/18 (94%), Positives = 18/18 (99%)
Frame = -3
Query: 376 MPYFRLRTAKEILRLKAD 323
MPYFRLRTAKEILRL+AD
Sbjct: 216 MPYFRLRTAKEILRLRAD 233
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 346,476,375
Number of Sequences: 1393205
Number of extensions: 6853085
Number of successful extensions: 11711
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 11507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11706
length of database: 448,689,247
effective HSP length: 110
effective length of database: 295,436,697
effective search space used: 7090480728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
