Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010629A_C01 KMC010629A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_145289.2| similar to hypothetical protein FLJ40722 [Homo ... 34 1.0
gb|AAM47511.1| calcium channel MID1 [Aspergillus nidulans] gi|27... 31 8.9
>ref|XP_145289.2| similar to hypothetical protein FLJ40722 [Homo sapiens] [Mus
musculus]
Length = 1283
Score = 34.3 bits (77), Expect = 1.0
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = -1
Query: 380 SDWEPQLLLADRSIVNRIWTILIKVTGEWDWGGFLESNFFIFLVVNYRILSNHIIILV 207
SD QLLL D S RIW ++ G +++ F + L V+ LS +++ILV
Sbjct: 1009 SDNVSQLLLTDESQRERIWDLMTTEEGFFEFPHLKPLLFLVLLAVHLATLSGNLLILV 1066
>gb|AAM47511.1| calcium channel MID1 [Aspergillus nidulans]
gi|27447377|gb|AAM47512.1| calcium channel MID1
[Aspergillus nidulans]
Length = 587
Score = 31.2 bits (69), Expect = 8.9
Identities = 21/54 (38%), Positives = 30/54 (54%), Gaps = 1/54 (1%)
Frame = +1
Query: 331 LFTMDLSANNSCGSQSDHRLRRSCIALYVVANKLRLSLXLCS-HMFDEMXSNXA 489
LF D +A NS +QSD+ +R+ A+YV SL +CS + +E SN A
Sbjct: 114 LFVPDSTAGNSSDAQSDNISKRASTAVYV-------SLTICSAPILNESISNTA 160
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,670,294
Number of Sequences: 1393205
Number of extensions: 8714815
Number of successful extensions: 35383
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 28679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35360
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
