Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC010627A_C01 KMC010627A_c01
(394 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_594087.1| hypothetical protein [Schizosaccharomyces pombe... 49 1e-06
ref|NP_175875.1| hypothetical protein; protein id: At1g54770.1 [... 46 1e-04
ref|NP_494563.1| Acidic protein mRNA (29.6 kD) [Caenorhabditis e... 45 3e-04
emb|CAB92796.1| dJ561L24.2 (acidic 82 kDa protein) [Homo sapiens] 44 6e-04
gb|EAA15082.1| agCP4527 [Anopheles gambiae str. PEST] 43 0.001
>ref|NP_594087.1| hypothetical protein [Schizosaccharomyces pombe]
gi|7491110|pir||T11651 hypothetical protein SPAC3G9.15c
- fission yeast (Schizosaccharomyces pombe)
gi|2706466|emb|CAA15924.1| eukarotic conserved protein;
similar to S. cerevisiae YLR051C [Schizosaccharomyces
pombe]
Length = 230
Score = 48.9 bits (115), Expect(2) = 1e-06
Identities = 22/52 (42%), Positives = 36/52 (68%), Gaps = 1/52 (1%)
Frame = -1
Query: 346 RVTKSKTIPKYFQMETVVDSPLDFFSGRL-TKERKSSLADELLSGQNLAAYW 194
R +K++PKYFQ+ ++V+ P DF+S R+ T+ERK ++ DELL +Y+
Sbjct: 147 RRENTKSMPKYFQVGSIVEGPQDFYSSRIPTRERKETIVDELLHDSERRSYF 198
Score = 23.1 bits (48), Expect(2) = 1e-06
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2
Query: 393 LLKFRSAIDPKR 358
LLK R+A+DPKR
Sbjct: 133 LLKMRNALDPKR 144
>ref|NP_175875.1| hypothetical protein; protein id: At1g54770.1 [Arabidopsis
thaliana] gi|27754411|gb|AAO22654.1| unknown protein
[Arabidopsis thaliana] gi|28393935|gb|AAO42375.1|
unknown protein [Arabidopsis thaliana]
Length = 189
Score = 46.2 bits (108), Expect = 1e-04
Identities = 26/52 (50%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = -1
Query: 349 RRVTKSKTIPKYFQMETVVDSPLDFFSGRLTKE-RKSSLADELLSGQNLAAY 197
+ V++SK KYFQ+ TV++ P + F GRLTK+ RK++LADEL+S A Y
Sbjct: 104 KSVSRSKLAEKYFQIGTVIE-PAEEFYGRLTKKNRKATLADELVSDPKTALY 154
>ref|NP_494563.1| Acidic protein mRNA (29.6 kD) [Caenorhabditis elegans]
gi|7332042|gb|AAF60729.1| Hypothetical protein Y49F6B.2
[Caenorhabditis elegans]
Length = 252
Score = 44.7 bits (104), Expect = 3e-04
Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = -1
Query: 325 IPKYFQMETVVDSPLDFFSGRLT-KERKSSLADELLSGQ 212
+PKYFQ+ VVD+P DF+S R+ KERK ++ DE+L +
Sbjct: 167 LPKYFQVGRVVDAPEDFYSSRMVRKERKKTMVDEILHNE 205
>emb|CAB92796.1| dJ561L24.2 (acidic 82 kDa protein) [Homo sapiens]
Length = 756
Score = 43.5 bits (101), Expect = 6e-04
Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Frame = -1
Query: 322 PKYFQMETVVDSPLDFFSGRL-TKERKSSLADELLSGQNLAAY 197
PKYFQ+ T+VD+P DF+ R+ K+RK ++ +ELL+ Y
Sbjct: 685 PKYFQIGTIVDNPADFYHSRIPKKQRKRTIVEELLADSEFRRY 727
>gb|EAA15082.1| agCP4527 [Anopheles gambiae str. PEST]
Length = 297
Score = 42.7 bits (99), Expect = 0.001
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = -1
Query: 355 STRRVTKSKTIPKYFQMETVVDSPLDFFSGRLTKERKS-SLADELLSGQNLAAY 197
S +R+ K K PKYF++ ++DSPLD F+ R K+ KS SL DELL+ Y
Sbjct: 217 SFKRLDKRKQ-PKYFEIGKIIDSPLDHFNERGMKKLKSKSLVDELLADAEFQKY 269
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 337,101,098
Number of Sequences: 1393205
Number of extensions: 6909727
Number of successful extensions: 17612
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 17139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17609
length of database: 448,689,247
effective HSP length: 106
effective length of database: 301,009,517
effective search space used: 7224228408
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
